Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1085 ATGTTCCCTTACAGTTCCAACCCCTACTCTTCCTTCCCTTCTTCATCTTCTTCTTCTCCATATCCTCCTTTTCCTTTCCTCAACATTGAGAATGCTTCTGCAAGCAACACACTTCTTCATGATTCACTCTCTGTGCCTTACATACCAACTCATCACCATAACCCTTCGAGCATCCAAGAAGCACTGAACAATTTGCCACTCACAGATCATAACTGTGGTGGTGGCAGCGGCGGCGGTGGTTCTTCGATGACCAAACCTGACCCTAGTGGTGGTGGTGGTGCTCATCACTATGGCATTTCTTGTTTCCTGACAAAGAAGCCGGCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGCTTGAGGGACAGAAGGGTGAGGCTTTCCATTGAGATTGCTCGAAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTTGCAAGGAGCAAGCAAAGCAACAACAACAGTACTGAGGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGAAGATGATGACTGTGAAGTGGTTTCCAAGCTTCAGAAACAACAACAACAACAACTCATCGCTTGTGGTGATGCTGCTCCCAACAACAACCTACAACAAGGGTTGTTGTTGGATTCAAGTGATAACAAGTCATCACCAACAGCATTGATGGCTGCTGCAAGGGAGAGGATGAAGCTGAAGAGGGCACAGAAGGAGCCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTAACAAGATAATGTGCAATAATGTTAACACCACCACAGGGAGGGTGGTGCAATCACAACAAGACTTGAAGAAGAAGTGCCCTGCAATTATTGAAAACAACAACCACTCTCATCAAATCCCTCAGCACCTTCTGGGAAGTGATTCACCAAGAGGAGATGACTTCAATGTTATTGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCTTCTTTGATGTCCTCCTCTTCTCATCATCATCTTCATCATCATCACCAAAACCTTGTGATCCCTAAGGAGCCACCAACCTTCAACAACAACAACAGTAACAGTGAGTACCACCCCTTCTCCAATTTGTCTCCAAATTGGGATGCTAATGGATCCAGCCGCTCCAACTTCTGTGCCATAGCCAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCACCAATCCACGTTAA 1287 0.46 MFPYSSNPYSSFPSSSSSSPYPPFPFLNIENASASNTLLHDSLSVPYIPTHHHNPSSIQEALNNLPLTDHNCGGGSGGGGSSMTKPDPSGGGGAHHYGISCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKQSNNNSTEEGAKSFSSSSECEDDDCEVVSKLQKQQQQQLIACGDAAPNNNLQQGLLLDSSDNKSSPTALMAAARERMKLKRAQKEPAKMKESREKARARARERTSNKIMCNNVNTTTGRVVQSQQDLKKKCPAIIENNNHSHQIPQHLLGSDSPRGDDFNVIEESIVIKRKLKPSLMSSSSHHHLHHHHQNLVIPKEPPTFNNNNSNSEYHPFSNLSPNWDANGSSRSNFCAIASMNLSTGLQIFGKSWEECTTNPR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1085 428 MobiDBLite consensus disorder prediction 168 190 - -
Aed3g1085 428 MobiDBLite consensus disorder prediction 348 383 - -
Aed3g1085 428 MobiDBLite consensus disorder prediction 250 273 - -
Aed3g1085 428 ProSiteProfiles R domain profile. 261 278 IPR017888 -
Aed3g1085 428 MobiDBLite consensus disorder prediction 367 383 - -
Aed3g1085 428 Pfam TCP family transcription factor 108 279 IPR017887 -
Aed3g1085 428 ProSiteProfiles TCP domain profile. 109 167 IPR017887 -
Aed3g1085 428 MobiDBLite consensus disorder prediction 169 185 - -
Aed3g1085 428 MobiDBLite consensus disorder prediction 65 92 - -
Aed3g1085 428 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 4 428 - -
Aed3g1085 428 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 428 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1085 Aed-Chr3 8562606 8564739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1085 104 181 TCP Transcription Factor Family AT1G67260 67.949 2.20e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed3g1085 TCP 1.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1085 - - gmx:100791288 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1085 3 8562606 8564739 Aed10g1194 10 11487905 11489597 ECH
Aed3g1085 3 8562606 8564739 Aed6g1702 6 20693652 20695121 ECH
Aed3g1085 3 8562606 8564739 Aed3g1085 3 8562606 8564739 ECH