Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed3g1080 | ATGGCGACTCCGCCGGTGGTGAGGTTCCCGATCTTCACGGCAGTGAGGGCGATCGGCGTCGCCGTCACCGTTCTTCTGCTGACGTGGGCCCTCCATTTCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATTTTTAATGTAACTCTCTCTCCTCGCTATAATCACTTTTCCTTTTCGGGTTATGGGTACGCGTTGTTTTCTCAAAATTTTCAGGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTGATCAATGGTGAAGGTATGCTTGCATACAAGACACTATCTGGAACCAAAAACTTCAAAAAAGGAGTTCATCTTGCATTACAGTCATTGGGTGCTGGCTTTGCAACATTTTGGTACCCAGGAGGGTCAAGAAATAGCAGAGCTGCCTTATTGCCATGGCATGTGTTCTTTGGTATCTACATCTATGCCTTGGCCATAGCCACAGCAGCAACTGGTATTCTAGAAAAAGCCACATTCCTTCAGGTCAACAACATCATATCACGCTACTCCAATGAGGCACTTCTGGTCAATTCCTTAGGCATTCTCATAGTCATTTTAGGTGGCTTTGTTATTCTTGGAATTGTTACACCAGTTTTTGGTAAAGCTGATGTCATAAGGGGAAATGAGTAG | 645 | 0.4558 | MATPPVVRFPIFTAVRAIGVAVTVLLLTWALHFRGGLALVSDNKDLIFNVTLSPRYNHFSFSGYGYALFSQNFQVHPVLMVIGLVLINGEGMLAYKTLSGTKNFKKGVHLALQSLGAGFATFWYPGGSRNSRAALLPWHVFFGIYIYALAIATAATGILEKATFLQVNNIISRYSNEALLVNSLGILIVILGGFVILGIVTPVFGKADVIRGNE | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed3g1080 | 214 | PANTHER | B561, PUTATIVE-RELATED | 5 | 50 | - | - | |
| Aed3g1080 | 214 | PANTHER | B561, PUTATIVE-RELATED | 117 | 213 | - | - | |
| Aed3g1080 | 214 | Gene3D | - | 1 | 115 | - | - | |
| Aed3g1080 | 214 | Gene3D | - | 116 | 212 | - | - | |
| Aed3g1080 | 214 | PANTHER | B561, PUTATIVE-RELATED | 61 | 115 | - | - | |
| Aed3g1080 | 214 | PANTHER | CYTOCHROME B561-RELATED | 61 | 115 | IPR043205 | GO:0016491 | |
| Aed3g1080 | 214 | PANTHER | CYTOCHROME B561-RELATED | 5 | 50 | IPR043205 | GO:0016491 | |
| Aed3g1080 | 214 | PANTHER | CYTOCHROME B561-RELATED | 117 | 213 | IPR043205 | GO:0016491 | |
| Aed3g1080 | 214 | SMART | 561_7 | 75 | 158 | IPR006593 | - | |
| Aed3g1080 | 214 | Pfam | Eukaryotic cytochrome b561 | 117 | 164 | IPR006593 | - | |
| Aed3g1080 | 214 | Pfam | Eukaryotic cytochrome b561 | 75 | 116 | IPR006593 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed3g1080 | Aed-Chr3 | 8518959 | 8521895 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed3g1080 | 1 | 210 | Chloroplast and Mitochondria Gene Families | AT5G38630 | 50.593 | 7.95e-79 | 234 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed3g1080 | K08360 | - | gmx:100787570 | 281.952 |
Event-related genes