Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1047 ATGGAAGCAGAAGAACACTTTCAACTTCCTCATCATCAATCTCACGGCTCTTCTGTTCAAGGCATGGAACAAGTGGTGGCAACGGTGAGCGGCTACCACGGCTCTGATCGATTCAACCTCATCAAGCTGATTTCACATGCTGGCGCCAATTACGTTGGTGCAATGTCAAAGTCTATAACGCATCTGGTGTGTTGGAAATTCGAAGGAAAGAAATATGATATAGCACGGAAGTTTAGAATAATTGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGACGTCTACCAGAAGATTCTTATACCTTGCAAAGTGGACATCAAGTAGGGGCATTGTTACTGGATGTTCCCCTCATTGTTCGAGCCAGTAGCATGACAGAGAAAAATTTGGTCAGTGACAAGTTACATGATAGTGGGTCTGAAAGGAAAAGTTTCAACTTTGGTTCTGGAGCTTCTGGAACTTATGTTTTGGAAGATTCTTGCTTGATGAAAAAGCATGAGGATTCAAGTTCATATTCATCTAGACTGTCGAGGAAAGGAAAAAGGCATATTTGCAATGGTAAGGGAGACAATACTGTGGCTGGACCTTCTCGTAAAGGAAGAAGACTTGCGAGAGATCTTGTTGATGATGTGGTCTTGGGTCCTTCAATTTTGGATTTAAGCTCAGATGACCACCTTTTTAGAATGGATAGGCTACAAACTGATGCCCCAGCTTCCTCTAGATTTTCTGGTGGTGTCAGTAATAATATTATTCTACAAAATAGTGAAGCACCTAATGGTGGATTAAGTAATCAAAGTAGAACTATCAATGATGGTTCAGATGACATTGAACAGATCAAAGATTCAAGTGATGTATCTGCACCTAGAAATTCAACTTTGTTTATTGAAGATCCCCTACCTATGCCACAAACACCAATAGATTTATGTTCCAGTGATGATGAAAAGCTCACAGATGGTGATCAGGTTGATAATGTTGCTGGCATACCTACTTCAACAGAGATGTCATGTGTTATATGTTTCACAGATTTCAGCTCAACACGGGGGATTCTGCCGTGTGGACATCGATTTTGTTTTCCATGCATCCAGAATTGGGTTGATCATAGGACTTCAATGAGAAAAACTTCAACGTGCCCTTTGTGCAAGGCAAGTTTTAGGATGATTAAGAAAGTTGAGCATGCAGCCAACGCTGATCAAAAAATATACTCCCAGACAATCCCATGTGATGATTCAGCCTCAGTTATTTTTGTCCCCGTGGATCAAAATTTACCAGATAATATCTATGAGTCTTTACAGGCAAATGCTTGTGTAGTGTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAATTGCCATGTTTGCCAGATTCGAAAGATCCATTCCTATTGCATGGACCCTCCACTACGGCCATGGATATGCACTCACTGCAAGGAGCTTCGGATACACTATCGTAGTAATCTCTTATATTAG 1473 0.4148 MEAEEHFQLPHHQSHGSSVQGMEQVVATVSGYHGSDRFNLIKLISHAGANYVGAMSKSITHLVCWKFEGKKYDIARKFRIIVVNHRWVEDCIKEGRRLPEDSYTLQSGHQVGALLLDVPLIVRASSMTEKNLVSDKLHDSGSERKSFNFGSGASGTYVLEDSCLMKKHEDSSSYSSRLSRKGKRHICNGKGDNTVAGPSRKGRRLARDLVDDVVLGPSILDLSSDDHLFRMDRLQTDAPASSRFSGGVSNNIILQNSEAPNGGLSNQSRTINDGSDDIEQIKDSSDVSAPRNSTLFIEDPLPMPQTPIDLCSSDDEKLTDGDQVDNVAGIPTSTEMSCVICFTDFSSTRGILPCGHRFCFPCIQNWVDHRTSMRKTSTCPLCKASFRMIKKVEHAANADQKIYSQTIPCDDSASVIFVPVDQNLPDNIYESLQANACVVCRGREPEDLLENCHVCQIRKIHSYCMDPPLRPWICTHCKELRIHYRSNLLY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1047 490 SUPERFAMILY RING/U-box 337 390 - -
Aed3g1047 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 408 IPR013083 -
Aed3g1047 490 MobiDBLite consensus disorder prediction 255 314 - -
Aed3g1047 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 488 IPR013083 -
Aed3g1047 490 ProSiteProfiles Zinc finger RING-type profile. 338 383 IPR001841 -
Aed3g1047 490 Gene3D BRCT domain 17 110 IPR036420 -
Aed3g1047 490 MobiDBLite consensus disorder prediction 255 274 - -
Aed3g1047 490 SUPERFAMILY FYVE/PHD zinc finger 434 479 IPR011011 -
Aed3g1047 490 SUPERFAMILY BRCT domain 19 106 IPR036420 -
Aed3g1047 490 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Aed3g1047 490 PANTHER F5A8.9 PROTEIN 19 166 - -
Aed3g1047 490 PANTHER F5A8.9 PROTEIN 137 485 - -
Aed3g1047 490 Pfam twin BRCT domain 25 87 IPR001357 -
Aed3g1047 490 SMART BRCT_7 19 95 IPR001357 -
Aed3g1047 490 SMART ring_2 338 382 IPR001841 -
Aed3g1047 490 ProSiteProfiles BRCT domain profile. 14 105 IPR001357 -
Aed3g1047 490 MobiDBLite consensus disorder prediction 174 203 - -
Aed3g1047 490 Pfam Zinc finger, C3HC4 type (RING finger) 338 382 IPR018957 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1047 59 111 Core DNA Replication Machinery Family AT4G02110 51.852 9.12e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1047 - - gmx:100815034 847.81