Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1029 ATGTCTTGGAAACTAGGCACAGCCACCTTCCCACGCGCCTGCGACGCGTGCGGCTCCGCCGCCTGCACAGTGTACTGCCTCGCCGACTCGCTGTTCCTGTGCTCGAGCTGTGACGCCACTGCTCACCACGTGGTGTCACAGCACGGACACCAGCGTGTGAGGGTGTGCGACGCATGTGCGCGTGCACCCTCGGCGTTTGTGTGTGGAGCGGACAATGCGTCGCTGTGCTATTCCTGTGACACTGAGATCCATTCCGCCAACCCTCTCGCTACCCGCCACCGGCGTGTGCCCGTCCTTTCCATTGGAGGAGAACAGAATTGCGACGGTGATGACATCGACAACAACGACGGTGACGTGGCAGCTGAAGCTGCCTCGTGGTTGGTTTTGAACCCTGAGAAGAACGATGATGCGTTGTTGTTTGGTGGGAAGTTCAAGGAGTATTTGGAGCTTGTGGAGGATTATAACTCGTGTTGTGAGAATGAGAATGGTTTCTGTGATGTTCGTTTTGATGATCAGATGCAAAACCAGCAGCAGCAGAGGGAGCGTTTTCAACTTGGTGTGGAGTTTGACTCCTCAAAACTTGACTATGATTATATGACTCAAAGTGTCTCAATTTCATCAACAACGGAGGTTAGCAGTGTACCAGAATCAACAACACTCAGCGACCAGCTCTCAATTTCTGAGTCAAATCCCGCCATAGATCTATCTTCTACAGGACCTCACATTTTGATGCCTTCATATCTTACATACAGAGAGTCAAGAGTCCAAAGATACAAAGAGAAAAAGAAGACAAGAAAGTTCGAAAAGAAAATTAGATACGCCTCCAGGAAAGCCTATGCAGAAATCAGACCCCGTGTTAAGGGTCGATTCGCAAAGAAAAATAGTAATAATGTAGAAGAAGCTGATGAAACGGATCACATGTTCTCCTCGACTTTGATTGCAGAAGAAGCAGGATATGGCGTTGTTCCATCTTTCTGA 978 0.4928 MSWKLGTATFPRACDACGSAACTVYCLADSLFLCSSCDATAHHVVSQHGHQRVRVCDACARAPSAFVCGADNASLCYSCDTEIHSANPLATRHRRVPVLSIGGEQNCDGDDIDNNDGDVAAEAASWLVLNPEKNDDALLFGGKFKEYLELVEDYNSCCENENGFCDVRFDDQMQNQQQQRERFQLGVEFDSSKLDYDYMTQSVSISSTTEVSSVPESTTLSDQLSISESNPAIDLSSTGPHILMPSYLTYRESRVQRYKEKKKTRKFEKKIRYASRKAYAEIRPRVKGRFAKKNSNNVEEADETDHMFSSTLIAEEAGYGVVPSF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1029 325 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 11 325 - -
Aed3g1029 325 CDD Bbox1_BBX-like 55 98 - -
Aed3g1029 325 ProSiteProfiles CCT domain profile. 251 293 IPR010402 GO:0005515
Aed3g1029 325 SMART bboxneu5 9 48 IPR000315 GO:0008270
Aed3g1029 325 SMART bboxneu5 51 98 IPR000315 GO:0008270
Aed3g1029 325 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 325 IPR045281 GO:0009909
Aed3g1029 325 CDD Bbox1 14 55 - -
Aed3g1029 325 Pfam B-box zinc finger 52 98 IPR000315 GO:0008270
Aed3g1029 325 ProSiteProfiles Zinc finger B-box type profile. 14 55 IPR000315 GO:0008270
Aed3g1029 325 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Aed3g1029 325 Pfam CCT motif 251 293 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1029 Aed-Chr3 7997014 8000033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1029 7 325 C2C2-CO-like Transcription Factor Family AT3G02380 44.633 8.20e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed3g1029 zf-B_box 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1029 - - vvi:100248114 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1028 3 7988765 7990592 Aed3g1029 3 7997014 8000033 PCT