Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1028 ATGTTGAAGGAAGGCACCAACAACAACGTTGGTGGCAGCACAGGCGGCGCCGGGAACTGGTCACGTGTCTGCGACACGTGTCGCTCGGCGCCGTGCGTGCTCTACTGCCATGCAGACTCGGCATACCTCTGCTCACCCTGCGACGCGCGCATCCATGCAGCCAACCGCGTGGCCTCGAGGCACGAGCGCGTGTGGGTGTGCGAAGCGTGCGAGCGTGCACCCGCCGCGTTCCTCTGCAAGGCGGATGCAGCATCTCTCTGCTCCTCCTGCGACGCCGACATTCACTCCGCGAACCCTCTCGCCAGCCGCCACCACCGCGTTCCCATCCTCCCGATCACGGGCTCCATGTTCGGAGAGCAGAAACAACACGAACACGTGGAACAACAACAACAACAACCGTTGTTGTTCCACGCGTTCGTGAACGAGGTGGAAAAGGGAGAAGAAGAAGAAGAAGAGATTTTTGATGAGTACGAGGATGAGGCAGAAGCCGAAGCCGCCTCGTGGCTTCTGTCTCATCCTCTGAAGAACAACAACAACAACCAAGACGAAGAGATTAATTGTGATGATGATGAGGGTTTTTTGTTTGGTGATGAGTATCTTGACTTTGTGGATTGTAACTCGTGCGGTCACAACAACAACAACCACTTTAGCAACGTTTATGATCAGCAACACCAACATCATCAGCATCAGCATCAGCATCAGCACCAGCAGCAGAATTACAACACCGTCCTCCCTCAGAACTTTGCGGTTGTTCCAGTTCAGGTGCCACAGCATTTTCAACCGGGTTTGGAATTTGACTCCTCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTAAGACTCTTAATTCTTTTCACTTTGTTGCTTATGTTTTATCAAGGGACAAGTACTACTACTGATCATTTATTCCCACCCCTTCCCATGCCTTCACATCTCACACCAATGGACAGAGAAGCAAGAGTCCTAAGATACAAAGAGAAAAAGAAGACAAGAAAGTTTGAGAAGAAAATTAGGTATGCCTCAAGAAAAGCCTATGCAGAAACTAGACCTCGCATAAAGGGTCGATTTGCAAAGAGAACTAGTGTTAATGTAGAAGCTGAAGTGGAGCAGATCATGTTTTCCACAGCACTATTCAGTGAAGTTGGAGGGGCCATTTTTCCCTCTTTCTAG 1179 0.4996 MLKEGTNNNVGGSTGGAGNWSRVCDTCRSAPCVLYCHADSAYLCSPCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPITGSMFGEQKQHEHVEQQQQQPLLFHAFVNEVEKGEEEEEEIFDEYEDEAEAEAASWLLSHPLKNNNNNQDEEINCDDDEGFLFGDEYLDFVDCNSCGHNNNNHFSNVYDQQHQHHQHQHQHQHQQQNYNTVLPQNFAVVPVQVPQHFQPGLEFDSSKAGFSYDGSLSQSVRLLILFTLLLMFYQGTSTTTDHLFPPLPMPSHLTPMDREARVLRYKEKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTSVNVEAEVEQIMFSTALFSEVGGAIFPSF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1028 392 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Aed3g1028 392 SMART bboxneu5 19 66 IPR000315 GO:0008270
Aed3g1028 392 SMART bboxneu5 67 109 IPR000315 GO:0008270
Aed3g1028 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 392 IPR045281 GO:0009909
Aed3g1028 392 Pfam CCT motif 320 362 IPR010402 GO:0005515
Aed3g1028 392 Coils Coil 140 160 - -
Aed3g1028 392 CDD Bbox1_BBX-like 23 66 - -
Aed3g1028 392 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Aed3g1028 392 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Aed3g1028 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 19 392 - -
Aed3g1028 392 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Aed3g1028 392 CDD Bbox1_BBX-like 66 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1028 Aed-Chr3 7988765 7990592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1028 1 392 C2C2-CO-like Transcription Factor Family AT3G02380 44.712 1.03e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed3g1028 zf-B_box 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1028 - - gmx:100782635 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1028 3 7988765 7990592 Aed3g1028 3 7988765 7990592 ECH
Aed3g1028 3 7988765 7990592 Aed3g1029 3 7997014 8000033 PCT