Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1025 ATGTCAACGTTAACTCGCAGAGATACTAAATGGCGCTCTGTGTTCATGGCCATTTGCTTTTCCCGAGCCCTTATGTTCCAAATCACTCTCAAAGCAAACAAAACAAAAGCAAAAGTCTCACCTACAACAACTTTCAACCCCGTAAACCAAACAAGCCTCACCAATATGGTCAAAGAAAAAGACCTTGAGAAGCTTCACATATTTGGTGGGGTTGAAGGGGTGGTTACAGCCCTTGAAACCCATGTTGAGTATGGTGTCAAAGGTGATCAAGATATGATCACACGTAGAAAACAAGAGTTTGGTTCCAACACTTACACCAAACCACCCACCAAAGGGTTCTTTCACTTTGTGGTGGAAGCCTTTAAGGATGTCACCATTCTCATCCTTCTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAGCATGGCCTCAAAGACGGTTGGTACGATGGTGGAAGCATTATTTTCACCGTGTTCATTGTCATTTCTGTGTCTTCTGTAAGCAATTTCAGACAGAATACACAATTTGACAAGTTGTCTCAAGTGAGCAATGACATACAAATTGAAGTGGTGAGAAGTGGGAGGCGCCAACATGTTTCCATCTTTGAAATAGTTGTTGGTGATGTCATTTTCTTGAAGATTGGAGATCAAGTGCCTGCTGATGGGTTATTCATAGAAGGACACTCACTTAAAGTTGATGAATCAAGCATGACAGGAGAGGGTGACGACCATGTTGAGATTAGCAGAAAGCACCACCCTTTTTTGTTCTCTGGCACCAAGGTGGCTGATGGGTATGCTAAGATGCTTGTTACATCGGTTGGTAAGAACACAGCATGGGGCCAAACGATGAATTCTATATGCAAAGACACTGATGAGCAAACTCCTTTGCAAAAGAGGCTAAACAAGCTAACTTCTTCCATTGGGAAGGTTGGTTTGGCTGTGGCTTTGCTTGTCCTTGTTGTTTTGTTGGTTAGGTACTTCACAGGGAACACAAAGGATGAGAATGGGGTCAGAGATTTCAATGGAGGCAAAACCAATTTCGATTTTATAATAAATGCTGTTGTGGGAATTGTTTCAGATGCAGTCACCAGTGTTGTTGTTGCAATCCCTGAGGGTCTTCCACTGGCCGTGGCTCTTACTTTGGCTTATTCAATGAAGAAAATGATAGCTAACCAAGCAATGGTGAGAAAGCTCTCTGCATGTGAGACAATGGGATTTGCAACCACAATTTGTACTGATAAGACAGGAACACTCACACTCAACCAGATGAGAGTGACCAAGTTTTGGCTTGGCCTTGAACCTGTGCTAGAAAGTGGCTACAGAGAGGTTGCTCCATTTGTTCTTCAATTGATCCAAGAAGGAGTGGCTCTCAACACAACTGGTAGTGTGCACAAGTCCAATAATGCAGGTCATGATGAAGTTGAGGTTTCAGGTAGTCCCACAGAGAAAGCAATCCTATCTTGGGCTATCCAAGACTTGAACATGGAGATGGAGCACTTGACAAGAAGTTGTTCCATCATTCATGTTGAGACCTTCAACTCAATGAAGAAAAGAAGTGGAGTTTTGTTGAAAAGGAGGGGAGACAACACAGTTCATGCACACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGTTCAAGATACTATGATGCTTCTGGCAACTTGAAAGATATTGACAATGATACCATGTCGAGGTTTGAGCAAATTATTCAAGGTATCGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTAGTAGCTGATGAGGAAGAGCATGGAGATCATGAAGAAGGCAATGAAGTGGTGAAAGTGAAAGACAGTGGTTTAACATTGTTGGGACTTGTGGGAATTAAGGATCCATGCCGTCCAGGGGTGAAGGATGCTGAGTTTCGCAACTACACACCCGAAGAGAGGTTGGAGAAGGTGGACAAAATCTGCGTGATGGTGAGATCTTCTCCTTATGACAAACTTCTAATGGTTCGGTGCCTAAAACAAAAGGGCCATGTAGTTGTTGTCACTGGAGATGGCACAAATGATGCACGGGCTCTCAAAGAAGCTGATGTTGGACTCTCTATGGGAATTCAAGGCACTGAAGTGGCAAAAAAGAGCTCAGACATTGTTATATTAGATGACAATTTTGTATCTGTGGTCGCTGTCTTAAGGTGGGGAAGATGTTTCAATGCGAGGGAGATGGAGAAGAGGAATGTTTTCAAAGGCATACTGAAAAACAAGTTGTTTTTGGGCATTATTTGCATCACAATAATGCTTCAAGTGGTGATGGTTGAATTTCTCAAGAAATTTGCTGGTACAGAGAGGCTAAATTGGAGTGAATGGGCTATTTGCATTGCTCTAGCCGCAATTTCTTGGCCAGTTGGTTGGGTTGTGAAGTTTATAGCTGTTGCAAATAAACCATTAAATTGA 2439 0.4285 MSTLTRRDTKWRSVFMAICFSRALMFQITLKANKTKAKVSPTTTFNPVNQTSLTNMVKEKDLEKLHIFGGVEGVVTALETHVEYGVKGDQDMITRRKQEFGSNTYTKPPTKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGLKDGWYDGGSIIFTVFIVISVSSVSNFRQNTQFDKLSQVSNDIQIEVVRSGRRQHVSIFEIVVGDVIFLKIGDQVPADGLFIEGHSLKVDESSMTGEGDDHVEISRKHHPFLFSGTKVADGYAKMLVTSVGKNTAWGQTMNSICKDTDEQTPLQKRLNKLTSSIGKVGLAVALLVLVVLLVRYFTGNTKDENGVRDFNGGKTNFDFIINAVVGIVSDAVTSVVVAIPEGLPLAVALTLAYSMKKMIANQAMVRKLSACETMGFATTICTDKTGTLTLNQMRVTKFWLGLEPVLESGYREVAPFVLQLIQEGVALNTTGSVHKSNNAGHDEVEVSGSPTEKAILSWAIQDLNMEMEHLTRSCSIIHVETFNSMKKRSGVLLKRRGDNTVHAHWKGAAEMVLKMCSRYYDASGNLKDIDNDTMSRFEQIIQGIAASSLRCIAFAHVEVVADEEEHGDHEEGNEVVKVKDSGLTLLGLVGIKDPCRPGVKDAEFRNYTPEERLEKVDKICVMVRSSPYDKLLMVRCLKQKGHVVVVTGDGTNDARALKEADVGLSMGIQGTEVAKKSSDIVILDDNFVSVVAVLRWGRCFNAREMEKRNVFKGILKNKLFLGIICITIMLQVVMVEFLKKFAGTERLNWSEWAICIALAAISWPVGWVVKFIAVANKPLN 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1025 812 SUPERFAMILY HAD-like 612 728 IPR036412 -
Aed3g1025 812 Gene3D - 90 289 - -
Aed3g1025 812 Gene3D - 423 626 IPR023299 GO:0000166
Aed3g1025 812 PRINTS Sodium/potassium-transporting ATPase signature 535 553 - -
Aed3g1025 812 PRINTS Sodium/potassium-transporting ATPase signature 406 427 - -
Aed3g1025 812 Gene3D - 733 806 - -
Aed3g1025 812 PANTHER CALCIUM-TRANSPORTING ATPASE 1 634 - -
Aed3g1025 812 Pfam Cation transport ATPase (P-type) 460 550 - -
Aed3g1025 812 SUPERFAMILY Calcium ATPase, transmembrane domain M 68 806 IPR023298 -
Aed3g1025 812 Pfam E1-E2 ATPase 189 390 - -
Aed3g1025 812 PRINTS P-type cation-transporting ATPase superfamily signature 679 698 - -
Aed3g1025 812 PRINTS P-type cation-transporting ATPase superfamily signature 235 249 - -
Aed3g1025 812 PRINTS P-type cation-transporting ATPase superfamily signature 703 715 - -
Aed3g1025 812 PRINTS P-type cation-transporting ATPase superfamily signature 413 427 - -
Aed3g1025 812 Pfam Cation transporting ATPase, C-terminus 721 804 IPR006068 -
Aed3g1025 812 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 419 631 IPR023299 GO:0000166
Aed3g1025 812 SMART Cation_ATPase_N_a_2 64 141 IPR004014 -
Aed3g1025 812 Pfam Cation transporter/ATPase, N-terminus 70 136 IPR004014 -
Aed3g1025 812 PANTHER CALCIUM-TRANSPORTING ATPASE 635 731 - -
Aed3g1025 812 PANTHER CALCIUM-TRANSPORTING ATPASE 732 797 - -
Aed3g1025 812 ProSitePatterns E1-E2 ATPases phosphorylation site. 415 421 IPR018303 -
Aed3g1025 812 SUPERFAMILY Calcium ATPase, transduction domain A 189 287 IPR008250 -
Aed3g1025 812 Gene3D - 410 634 IPR023214 -
Aed3g1025 812 Gene3D - 635 724 IPR023214 -
Aed3g1025 812 PANTHER CATION TRANSPORTING ATPASE 635 731 - -
Aed3g1025 812 PANTHER CATION TRANSPORTING ATPASE 732 797 - -
Aed3g1025 812 PANTHER CATION TRANSPORTING ATPASE 1 634 - -
Aed3g1025 812 Gene3D - 119 409 - -
Aed3g1025 812 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 653 767 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1025 Aed-Chr3 7905306 7908380 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1025 732 809 Primary Pumps ATPases AT3G22910 64.103 3.03e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1025 K01537 - gmx:100793918 1057.74