Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1015 ATGAGGAAACCTGATTTGATGGGAAAAGACAAAATGAACAACAACAATAACAACAACAACATTAAGAGCAAGCTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTGATAAGGTACATGATAACTAAGGGACAAGGGTGTTGGACTGACATTGCTAGGAATGCTGGACTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCACAAGAGGAAGAACTCATCATTCACTTCCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCGGCACGTCTCCCTGGTCGAACAGACAATGAGATCAAGAATTTCTGGAACTCCACACTCAAGAAAAGGTTCAAAATGATGAACAACAACAACTCCACTTCATCACCAAACAACAGTGATCACTCATCAGAGCCTATAGATCATGTTGTAATGGATGGGATCATACCCATGATCATGAACGAGCAGCATGACCATCACCTCGTGACCATGTGCATGGAGTCATCCTCATCAACAACAACATCATCATCATTGTCCATGCAATCCATGCATGCCATCAACATGGCACTAACTAACCAATTTGACCCCTTTCCCCGTTATGACATGAACATGACGACTACCGGTGCAGCCGGTTTCCTTGACAACATGGCTGCTGCATGCAGCTTAACCCAACAACAACAAGTTGGCATGGTAGATCATGATCATGATCTTGATCATGTTCATGGGATGACAATGTTGGAGCAGCCTAATAAAACGGGGTTGGAAAGTGACTTTTCCCTTCCTCCACTAGAAATTGAGGACAATAGTAATAGCACCCCAATTGATGTGAAAAGCCATAACAACAACCACTTCAAGAATAGTAGTAGTTGCTTCAATAACACGGATCACCATCATATTCAATGCTCCAACAACGTAGTTGTGGAGGATTTATTTGGCTTTGGAAATCATGGGCTAGGGGAAAACTTTAGAATGGGAGAATGGAACGACTTTGAGGGCTTGATGCAAGACATGTCCTATTTTCCTTCCCTTGATTTCCAAGTTTAA 1077 0.429 MRKPDLMGKDKMNNNNNNNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWTDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKMMNNNNSTSSPNNSDHSSEPIDHVVMDGIIPMIMNEQHDHHLVTMCMESSSSTTTSSSLSMQSMHAINMALTNQFDPFPRYDMNMTTTGAAGFLDNMAAACSLTQQQQVGMVDHDHDLDHVHGMTMLEQPNKTGLESDFSLPPLEIEDNSNSTPIDVKSHNNNHFKNSSSCFNNTDHHHIQCSNNVVVEDLFGFGNHGLGENFRMGEWNDFEGLMQDMSYFPSLDFQV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1015 358 CDD SANT 30 74 IPR001005 -
Aed3g1015 358 Gene3D - 81 152 - -
Aed3g1015 358 PANTHER MYB DOMAIN PROTEIN 55 1 358 - -
Aed3g1015 358 SMART sant 79 127 IPR001005 -
Aed3g1015 358 SMART sant 26 76 IPR001005 -
Aed3g1015 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Aed3g1015 358 MobiDBLite consensus disorder prediction 1 23 - -
Aed3g1015 358 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Aed3g1015 358 PANTHER TRANSCRIPTION FACTOR MYB83 1 358 - -
Aed3g1015 358 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Aed3g1015 358 CDD SANT 82 125 IPR001005 -
Aed3g1015 358 Pfam Myb-like DNA-binding domain 80 124 IPR001005 -
Aed3g1015 358 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Aed3g1015 358 Gene3D - 27 79 - -
Aed3g1015 358 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Aed3g1015 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1015 Aed-Chr3 7810503 7814136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1015 1 358 MYB Transcription Factor Family AT3G08500 46.216 3.58e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1015 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1015 K09422 - gmx:100813660 473.396