Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1012 ATGTCTAATCATCTTCATCATTCATCCAATCCGTTCTCATCATCCTCATCCACTCACTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGCTCTCGCCTCTGCTCTTGCGACGACGACGAGGACACTGACGTAAACCCCTTCTCCGACGTCGTCTGCGATCTACATCGCACGCAACATGTGTTAGGGTTAGGGCTTGGCGTCGAAATTGAGCCCCAAACCCGATTAAACGATCGTGATAATCGTCGTGATAGGGTTTTCGATGCTGACAGAGCTTTAGATTTCGCGGTGGGAGATGGTTCGGGCGGGCTTAGGGTTGTAGGGTTTGGTTCGGATTCCGATTCGAGTGGCGAGGAGGGTGGGATTGACGACGGTGGCGGGTTCGATGATTTCGATGTTCGGTTGTGTTGGGACAGTCTCTGTTTGGAGGATCAGAGGACGCTGAATGAGGGGTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAATGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAAATTGAAGGTGACGGGAATTCGGTGGCATCCGGGTTTACTAATGCCGTTGAGGAGGAGGATGCCGGGGAAGAGGCTCTGAGGTACCTCGAATGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTGAACGGTGTGTTGTTGGAGCATGAGGGCAATAATGCTGGTGGTGCTGCTGATTTGTTGACAATTCAGGATGGTTATGTGTATGCAACGGAGTATGATGTTTTATTCGGGCAGTTTCTTGAGAACGAGGGTGCCCTGAAGGGGAGCCCTCCAGCTGCAAAGAGTGTTGTGGAGAGTCTCCCGCTGGTGGAGTTGTCGAAGGAGGAGTTGCAGGGGAAGAACATGGCGTGCGCCATTTGCAAGGACGAGATTTTGTTGGAGGAGAAGGTCAGGAGGCTGCCTTGCTTGCATTGTTATCACGGGGACTGCATTTTGCCATGGTTGGGTATCCGCAACACTTGCCCGGTTTGTCGGTTTGAGCTGCCCACTGATGATCCAGACTATGAGCAGAGGAAGGTCCACAGGGCTGCTCATGATCTGCTGGAGCTTGCTGCAGCACGGATGCAATTTTGA 1128 0.523 MSNHLHHSSNPFSSSSSTHSDSDSDSVSCFVTDLFETRSRLCSCDDDEDTDVNPFSDVVCDLHRTQHVLGLGLGVEIEPQTRLNDRDNRRDRVFDADRALDFAVGDGSGGLRVVGFGSDSDSSGEEGGIDDGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIEGDGNSVASGFTNAVEEEDAGEEALRYLEWEILLAVNNSERNVNGVLLEHEGNNAGGAADLLTIQDGYVYATEYDVLFGQFLENEGALKGSPPAAKSVVESLPLVELSKEELQGKNMACAICKDEILLEEKVRRLPCLHCYHGDCILPWLGIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELAAARMQF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1012 375 MobiDBLite consensus disorder prediction 1 24 - -
Aed3g1012 375 SMART ring_2 302 342 IPR001841 -
Aed3g1012 375 Pfam Ring finger domain 301 343 IPR001841 -
Aed3g1012 375 SUPERFAMILY RING/U-box 292 350 - -
Aed3g1012 375 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 375 - -
Aed3g1012 375 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 375 - -
Aed3g1012 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 349 IPR013083 -
Aed3g1012 375 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1012 Aed-Chr3 7743138 7744265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1012 101 357 C3H Transcription Factor Family AT3G02340 37.931 3.25e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1012 - - gmx:100812037 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1012 3 7743138 7744265 Aed3g1012 3 7743138 7744265 ECH