Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1004 ATGATTCGTAAAGCTGATTTAGTTATCATCGGTGTTTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGCCTCATATTTTTTGGCATAAGGTGGTACAAGAAACGTGCTCATATTAGACAATCTGCAAATGAGTCTAGTGTAACAACTCTTCCAATACGAGCAAATGGATTTGGAACAAGTACCGACTTTAGTGCATCTCTTGATAGTTCCATAGCTATGTCAAGGTCAGAAAATCTAAAGAAAAATTCCCATTTTACTTGGTGGAATCATCAAAATAAAGATCGGTTTGCTTCAGCATCAGGCATTCCTAAGTATCCGTACAAAGAAATTCAAAAGGCCACACAAAATTTCACTACTACTTTGGGACAAGGATCATTTGGCACTGTCTATAAAGCAACAATGCCTACAGGAGAGGTTGTAGCAGTGAAGGTGCTTGCAACCAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTCGATAAAGGACAACGCATACTGATTTATCAATACATGAGTAATGGAAGCTTAGCAAGTCTTTTATATGGTGAAGAAAGGCAATTGAGTTGGGATCAAAGGCTGCAAATTGGTCTTGATATTTCACACGGAATAGAATACCTTCATGAAGGAGCAGTCCCACCCGTCATACATCGCGATTTGAAGTCTGCCAACATATTGCTTGATCACTCTATGAGAGCTAAGGTTGCTGATTTTGGGCTTTCAAAGGAAGAGATCTTTGATGGCCGGAATTCTGGTCTCAAAGGTACATATGGCTACATGGATCCTGCATACATCTCAACAAGCAAGTTAACAACAAAGAGTGACATATACAGTTTCGGTATCATAGTGTTTGAGCTCATCACTGCCATCCACCCCCATCAGAATTTGATGGAATATGTTAACCTTGCTGCAATGGATCATGATGGTGTAGATGAGATACTTGACAAACAACTTGTGGGAAAGTGCAACCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGGACACAAATGCTTGCACAAATCACCTAGGAAACGCCCCTCTATAGGTGAAGTTTCACAGTTCATATCAAGAATAAAGCAAAGGCGACAGCGCCGTCTAACAGATGATAACATGTCGTTTTCAAGCAACAACTTTTCTCGAGCTGTGAGTCGGTTAGATGATCGACAGGTTGAATTAAGTAGGATGTCAACCATTAATCTCACAGAAACTGTATGA 1275 0.4024 MIRKADLVIIGVSVGLALGILISCLIFFGIRWYKKRAHIRQSANESSVTTLPIRANGFGTSTDFSASLDSSIAMSRSENLKKNSHFTWWNHQNKDRFASASGIPKYPYKEIQKATQNFTTTLGQGSFGTVYKATMPTGEVVAVKVLATNSKQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGQRILIYQYMSNGSLASLLYGEERQLSWDQRLQIGLDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGVDEILDKQLVGKCNLEEVRQLAKIGHKCLHKSPRKRPSIGEVSQFISRIKQRRQRRLTDDNMSFSSNNFSRAVSRLDDRQVELSRMSTINLTETV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1004 424 SMART serkin_6 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1004 424 ProSiteProfiles Protein kinase domain profile. 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1004 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Aed3g1004 424 SUPERFAMILY Protein kinase-like (PK-like) 103 404 IPR011009 -
Aed3g1004 424 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Aed3g1004 424 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Aed3g1004 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Aed3g1004 424 CDD STKc_IRAK 122 378 - -
Aed3g1004 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Aed3g1004 424 Gene3D Transferase(Phosphotransferase) domain 1 192 402 - -
Aed3g1004 424 PANTHER OS01G0750732 PROTEIN 9 419 - -
Aed3g1004 424 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1004 Aed-Chr3 7637327 7641527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1004 7 371 Receptor kinase-like Gene Family AT5G61350 36.719 3.00e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Aed3g1004 PK_Tyr_Ser-Thr 6.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1004 - - gmx:100819995 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1004 3 7637327 7641527 Aed3g1004 3 7637327 7641527 ECH
Aed3g1004 3 7637327 7641527 Aed3g1004 3 7637327 7641527 PCT