Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0998 ATGCTATATATGCGAATTCGTCAAACACAACACACACACTTTCGTTCCTCGTTTCATTCCCTTTCCTTCTTTTGTCTTCCCCTTAGTGTCTTTCTTAATTGGGAAAGCTTGTTTTTGAAGAAGATCATCATCATGGGAAGAGGGAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTGACGTTTTCAAAAAGGAGAACTGGGCTTCGCAAAAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAAGTAGCACTCATCATGTTCAATGCTAAAGGGAAGCTTTTTGAGTATTCTTCTGAATCCAGCATGGAAAACATCTTGGAACGGTATGAGAGACATGCCCATATAGGGCAACTTGTTGATGGTGATGAATCACAGGGCAACTGGTCCTTACAATGCTTCAAACTCACAGGCAAAATTGAAGTCTTAGAGAAGAATTTAAGGAACTTTGTGGGACAAGATCTGGATCCCTTGAACTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAGCGCATCCGAACTAGAAAGAGCCAAGTTATGAATGAATCCATCTCAGATCTGCAGAAAAGGGCAAAGGAGTTGCAAGAGAGAAATGGCACGCTGACAAAGAAGATTAAGGAGAAAGGGAAAGCAGTAGCTGAACGTCCACACTGCGTGCCTGAAAACTTAGGTCTAATTACATGCCCTCCAGAGCTCCTACAATCAGAGCAAAGACTAGTTCCTTCTGTAGCACCACGTGAGACATTGGAAGCAACAATGCCAGAGGAGGAAATGGTTGAAGCACAAACAGTTCCTTATGCCACTACTCCTCTCATCCCACCATGGATGCTTCATCACTTTGCAAGATAA 876 0.4326 MLYMRIRQTQHTHFRSSFHSLSFFCLPLSVFLNWESLFLKKIIIMGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIMFNAKGKLFEYSSESSMENILERYERHAHIGQLVDGDESQGNWSLQCFKLTGKIEVLEKNLRNFVGQDLDPLNLRELQSLEHQLDTAIKRIRTRKSQVMNESISDLQKRAKELQERNGTLTKKIKEKGKAVAERPHCVPENLGLITCPPELLQSEQRLVPSVAPRETLEATMPEEEMVEAQTVPYATTPLIPPWMLHHFAR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0998 291 SUPERFAMILY SRF-like 46 125 IPR036879 GO:0003677|GO:0046983
Aed3g0998 291 ProSitePatterns MADS-box domain signature. 47 101 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 Pfam K-box region 128 214 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0998 291 ProSiteProfiles K-box domain profile. 130 220 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0998 291 Coils Coil 186 213 - -
Aed3g0998 291 SMART madsneu2 45 104 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 PRINTS MADS domain signature 47 67 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 PRINTS MADS domain signature 82 103 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 PRINTS MADS domain signature 67 82 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 CDD MADS_MEF2_like 46 119 IPR033896 GO:0000977|GO:0045944
Aed3g0998 291 Gene3D - 57 128 IPR036879 GO:0003677|GO:0046983
Aed3g0998 291 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 101 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 ProSiteProfiles MADS-box domain profile. 45 105 IPR002100 GO:0003677|GO:0046983
Aed3g0998 291 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 45 252 - -
Aed3g0998 291 PANTHER MADS BOX PROTEIN 45 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0998 Aed-Chr3 7525474 7539471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0998 45 217 MADS-box Gene Family AT1G26310 61.582 6.17e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed3g0998 K-box 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0998 K09264 - gmx:100787971 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0998 3 7525474 7539471 Aed6g1650 6 20364230 20369586 ECH
Aed3g0998 3 7525474 7539471 Aed3g0998 3 7525474 7539471 ECH
Aed3g0255 3 1885776 1892249 Aed3g0998 3 7525474 7539471 ECH
Aed11g0495 11 4350458 4356150 Aed3g0998 3 7525474 7539471 ECH
Aed3g0998 3 7525474 7539471 Aed3g0998 3 7525474 7539471 PCT