Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0988 ATGCTTTTCCGTTACAGTGTCACCCCCACGATCCGATCCTCCCTTAAACCACCTCCATGCATTCTGCTTTTCGTTCTCTTCTTCTCCTTCACGTGCTTCACTTCCACAGAAGCTTATGATCCACTTGATCCAAATGGCAATATCACAATCAAATGGGATGTTATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTGACAATGAACAACTTCCAACAATACCGCCAAATCTCAGCACCAGGGTGGTCACTAGGATGGACATGGGCCAAGAAGGAGGTAATATGGAGCATGGTGGGAGGGCAGGCCACTATACAAGGGGATTGTTCAAAATATAAGGGAAACATCCCACATTGCTGTTTAAGGGATCCGATAATTGTAGATTTACTTCCTGGAACGCCTTACAACCAACAAATTGCAAACTGCTGCAAAGGTGGTGTACTCAGCTCTTGGGCGCAGGATCAATCCAAAGCGGTTTCGGCATTTCAAATCAGTGTAGGTAATGCTGGTACCAATCACAAAACTGTCAAACTACCTCAAAATTTCACCTTGCAAGCACCAGGGCCCGGTTACACATGTGGGCAGGCAAAAATTGTGCAACCAACTAAATTTATAACACCAGACAAAAGGAGAGTGACCCAAGCATTCATGACATGGAATGTAACATGCTCATATTCACAATTTCTTGCTCAGAGAACACCCTCTTGCTGCGTCTCTCTCTCATCATTCTATAACGACACTGTTGTACCCTGCAATACATGTTCATGTGGCTGCCAAGGCAACTCATCTCAGGCAGGGGAATGTATAGATCCAGCTTCACCACATTTGGCATCAGTTGTTTCCAACCATGGACATGGAAAGAGTAGTACTACACCTTTGGTTCGATGTACTCGTCATATGTGTCCAATCCGAGTTCACTGGCACATCAAGCTCAACTACAAGGAGTATTGGCGTGTGAAGGTCACTGTTACTAATTTCAATTACGGAATGAATTATTCTGATTGGAACTTGGTTATTCAACATCCAAACTTCGATCAAGTGACCCAACTTTTCAGTTTCAACTACAAAGGAATAACTCCCTACGGGTCAATAAATGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTAATGGTAATGCGCAGTCAGAGATACTATTCAGAAAGGATAAATCAACATTCACTTTTGGCAAGGGTTGGGCCTTCCCTCGGAGAGTCATTTTCAATGGTGACGTTTGTGTGATGCCACCACCCGATGCTTATCCATGGTTACCTAATGCTGCTTCCAAGCAACAAGAGGTTTCCCTGCTTGCTTTGGTGATGACCGCATTGGTGGTAGCCTTGGTATCATATGCATAA 1380 0.4406 MLFRYSVTPTIRSSLKPPPCILLFVLFFSFTCFTSTEAYDPLDPNGNITIKWDVISWTPDGYVAVVTMNNFQQYRQISAPGWSLGWTWAKKEVIWSMVGGQATIQGDCSKYKGNIPHCCLRDPIIVDLLPGTPYNQQIANCCKGGVLSSWAQDQSKAVSAFQISVGNAGTNHKTVKLPQNFTLQAPGPGYTCGQAKIVQPTKFITPDKRRVTQAFMTWNVTCSYSQFLAQRTPSCCVSLSSFYNDTVVPCNTCSCGCQGNSSQAGECIDPASPHLASVVSNHGHGKSSTTPLVRCTRHMCPIRVHWHIKLNYKEYWRVKVTVTNFNYGMNYSDWNLVIQHPNFDQVTQLFSFNYKGITPYGSINDTAMLWGIKFYNDFLMQAGPNGNAQSEILFRKDKSTFTFGKGWAFPRRVIFNGDVCVMPPPDAYPWLPNAASKQQEVSLLALVMTALVVALVSYA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0988 459 PIRSF COBRA 13 459 IPR006918 GO:0010215|GO:0031225
Aed3g0988 459 PANTHER PROTEIN COBRA 17 458 IPR006918 GO:0010215|GO:0031225
Aed3g0988 459 Pfam COBRA-like protein 62 225 IPR006918 GO:0010215|GO:0031225
Aed3g0988 459 PANTHER COBRA-LIKE PROTEIN 17 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0988 Aed-Chr3 7415696 7420465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0988 25 455 COBRA Gene Family AT3G02210 70.070 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0988 - - gmx:100797383 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0988 3 7415696 7420465 Aed3g0988 3 7415696 7420465 ECH
Aed3g0264 3 1979929 1984073 Aed3g0988 3 7415696 7420465 ECH
Aed3g0988 3 7415696 7420465 Aed3g0264 3 1979929 1984073 PCT
Aed3g0989 3 7420781 7423924 Aed3g0988 3 7415696 7420465 PCT
Aed3g0988 3 7415696 7420465 Aed3g0988 3 7415696 7420465 PCT