Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0967 ATGATCAACAACAGCACAAAAGAAGCTGATCATCATCATTTTCCACTAAAACAAGAAGGCCTCTCATCAAGCTGTGATCATAACAATGAAAAGGCTAAGGCTAATATTTCAACGAGCTCATCATCTTCACAATGGCTAAAGCTGAAGGATCCAAGGATCGTTCGAGTCTCAAGAGCCTTTGGAGGAAAAGACAGACACAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGGAGGGTGAGGCTTTCAGTGCCTACAGCAATTCATCTCTATGATCTCCAAGACAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCAGCAAAGCATGAGATTGATGAACTTCCACCACTTCCTATTCCTCCAGGTAACTTCACACTTGGCTATCCCTCTCTTGTTTGTAATGAAGGTTCAGGCCAAAACAGTGCTTCTTTATGGAAATCATCATCAAAATCAGGAGGTGAAATGGTACTTAGCCATCATCATCATGATAAAGCAAATTGGATAACTAGAAGTGAAGAAGGAGATGATAATAATAATAATAATAATAACAATAACAAGGATTTGGATGGTGCACTTGTTTTGCCAAATAGTAGTAGTAATAGTAGTAGTAGTACTACTCTCTTGCCAAGGCCAAACCATGCTTCTTTTTTGGGCTTGATGAACACTATGCCATCACTTGGTTACAATTGGGAGCCTAATAACAATTCATCAGGTGGTGATGTTGCTGCTCAATGGCAAAACCACCATGGATTTGTTAATAGCCAACAAACAGATGTACTACACAGCATCAATGTGGTTCCATTCCCATCAACATTGGCTCTATCAACTGGGAATACTAGTAGTAGTACTCCTCAAATCTTGGTGTGTCCTCCTCCTGGAGCAACAACACAACCATATTTCCCTTCACATCATGTTGCTGCAGCAATGGAGATGAATGCAAGACAAATCAACCACTATCAGATGCTGAGTTCCAGTTCTCATCATCAAAATCTCTTGGAAAATTCTCTCAATCCATCACAGCATCAACTCTTGAGCCAATCTGGGAAATTACCCTTCAGCTTGGGTATTAGGCCTAAACTTTTCCACTCTCCTAACACCAGTGAAAGCCATTCTCAACAAAAAGAGCAGGATTTCCCTTCCAAGTGA 1164 0.4089 MINNSTKEADHHHFPLKQEGLSSSCDHNNEKAKANISTSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVCNEGSGQNSASLWKSSSKSGGEMVLSHHHHDKANWITRSEEGDDNNNNNNNNNKDLDGALVLPNSSSNSSSSTTLLPRPNHASFLGLMNTMPSLGYNWEPNNNSSGGDVAAQWQNHHGFVNSQQTDVLHSINVVPFPSTLALSTGNTSSSTPQILVCPPPGATTQPYFPSHHVAAAMEMNARQINHYQMLSSSSHHQNLLENSLNPSQHQLLSQSGKLPFSLGIRPKLFHSPNTSESHSQQKEQDFPSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0967 387 MobiDBLite consensus disorder prediction 366 387 - -
Aed3g0967 387 MobiDBLite consensus disorder prediction 1 41 - -
Aed3g0967 387 MobiDBLite consensus disorder prediction 178 215 - -
Aed3g0967 387 MobiDBLite consensus disorder prediction 21 41 - -
Aed3g0967 387 MobiDBLite consensus disorder prediction 361 387 - -
Aed3g0967 387 Pfam TCP family transcription factor 62 191 IPR017887 -
Aed3g0967 387 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 11 381 - -
Aed3g0967 387 ProSiteProfiles TCP domain profile. 62 120 IPR017887 -
Aed3g0967 387 MobiDBLite consensus disorder prediction 1 17 - -
Aed3g0967 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 381 IPR005333 GO:0003700
Aed3g0967 387 MobiDBLite consensus disorder prediction 176 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0967 Aed-Chr3 7235918 7238797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0967 45 132 TCP Transcription Factor Family AT3G02150 84.091 2.97e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed3g0967 TCP 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0967 - - gmx:100803100 485.337