Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0946 ATGACTTCCCCACGCAACACCACTACTGCTGTTCACTTCTTTAAGATAATTCAAAGACCAAGTCTTGCACATGGAATACTTAAGCTTCCAAAAGATTTTACTACAAAATATGGAGATAGGATGTCAAACCCGGTGTTTCTGAAGCCACCAGATGGCACTGAATGGAAAATATATTGGACCATGCTTGATGGCCACGAGGTTTGGTTTCAAAAGGGTTGGAAGGAGTATGTCACATACTACTCCCTTGATCATGGCCACTTTCTGTTGTTTCAGTATCATGAGACTTCTCATTTTGATGTGCACATATTCGACAACAGTGCTGTTGAAGTAGACTATCCTCAACCTTGTTCTAAGGAAATGAAATCTGGCCTAACTACAAATGTTGAAGGAAGTACTAGCTCTCAAAAGGAAAACATTATGAATCAAGAAGTAGATGATGGTGGGAGTTCAAGGGAAAGTTCTTCACAATTTGAAAGCCAATGCAAGTCAAAGATCTTGGAAACTAGAGCTCATGAAGAAGCAAGAAAATTCACATCAGAAAATCCATTTTTCATGGTCACTTTAGCTTGTTTGAGGAAAAATGTAATCAAACGCCCGTTTGTGACGAATAAGTTTGTAAGAAAGTATTTTGCAAACATGGAACAGAATATGGTGAAGATACAGCTTGGTAACAAATTGTGGCCTGTAAAGCTTGTACTTAGTGAATGCAACGCAGGCACGCTCTCTGCTGGTTGGTTCTCATTTGCAAGAGAAAATAAACTGCAATCCGGAGATGTTTGTATCTTTGAACTCGTCAACAGAGAAGATGCAATACTTGATGTTCATGTTTTCAGAGGCTAA 840 0.3905 MTSPRNTTTAVHFFKIIQRPSLAHGILKLPKDFTTKYGDRMSNPVFLKPPDGTEWKIYWTMLDGHEVWFQKGWKEYVTYYSLDHGHFLLFQYHETSHFDVHIFDNSAVEVDYPQPCSKEMKSGLTTNVEGSTSSQKENIMNQEVDDGGSSRESSSQFESQCKSKILETRAHEEARKFTSENPFFMVTLACLRKNVIKRPFVTNKFVRKYFANMEQNMVKIQLGNKLWPVKLVLSECNAGTLSAGWFSFARENKLQSGDVCIFELVNREDAILDVHVFRG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0946 279 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Aed3g0946 279 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Aed3g0946 279 ProSiteProfiles B3 DNA-binding domain profile. 184 279 IPR003340 GO:0003677
Aed3g0946 279 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 278 - -
Aed3g0946 279 Gene3D - 5 107 IPR015300 -
Aed3g0946 279 Gene3D - 165 279 IPR015300 -
Aed3g0946 279 PANTHER B3 DOMAIN-CONTAINING 2 278 - -
Aed3g0946 279 SUPERFAMILY DNA-binding pseudobarrel domain 177 278 IPR015300 -
Aed3g0946 279 SMART B3_2 13 106 IPR003340 GO:0003677
Aed3g0946 279 SMART B3_2 187 278 IPR003340 GO:0003677
Aed3g0946 279 CDD B3_DNA 182 278 IPR003340 GO:0003677
Aed3g0946 279 Pfam B3 DNA binding domain 13 105 IPR003340 GO:0003677
Aed3g0946 279 Pfam B3 DNA binding domain 200 278 IPR003340 GO:0003677
Aed3g0946 279 MobiDBLite consensus disorder prediction 122 158 - -
Aed3g0946 279 CDD B3_DNA 12 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0946 Aed-Chr3 6964738 6969565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0946 13 278 B3 DNA Binding Superfamily AT3G18990 28.107 3.47e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed3g0946 B3 3.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0946 - - ccaj:109794243 223.402