Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0933 ATGGCGGCGGCTAAACCCCAACGTACACCACAGGAGGTGGAAGACATCGTAATCCGCAAAATCTTCCTCGTCTCCATAACCGAAATCGCCGCCACCGCGGCGGCAGCAGATTCGAGAATCGTGTATTTGGAACTAACCGCCGCGGAGATTCTCAGCGAGGGCAAAGAGCTCCGCCTCTCGCGAGATTGCATGGAGAGGGTTTTAATCGACCGCCTCTCCGGCGATTTCCCCGACGCTGCCGCTGCCGACGAGTCTCCGTTTCAGTACCTCCTCGGCTGCTACCATCGCGCGCACGAGGAGGGGAAGAAAATCGCAAACATGAAAGACAAAAGCTTGCGGTCGGAGATGGAGGCAGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATCTCGCGAATCCGGAGCTCTTTCCCAGCCGGAATTCCAGCGCCAATTCCCCGCTGCTGCCGCTTATTTTCTCCGAGGTCGGCGGCGGGAATCTCTTCGGAGGAGGTAGCGGGGGAGGGGCCAAGAGTCCGCCGGGGTTTCTTGAGGAGTTTTTCAGGGACCCTGATTTTGACAGCTTGGAGAAGATAATGAAGGGGCTCTATGAGGAGTTGAGAGGGAGTGTGATGAAGGTGTCTGCTCTTGGGAACTTTCAGGACTCGCTAAGGGCTTTGTTGTATTTGGTTAGGTTTCCCATTGGTGCTAAGTCTCTTGTGAATCACGAGTGGTGGATTCCCAAAGGGCAGTGTTTTTCTGATGCATCAACTAGGCGACCAGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGTACAGATACTCGTGAAAGTGTACTTGAGTATCTTGCGGAGGTCATCAATATAAATGCATCCAGGGCTCATATACAGGTTGATCCTATTACTTGTGCAAGTTCAGGCACGTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTACTCAAACCGCTTGAAGATAAGTGGGTTGACCGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGGTTAATAGTAAAAACCCAGCTACAACTGGGGCAACCAATCAATATAATGATGATCAGAAACGCTTGCAACAGTCCCAAGAGGCCAGTAGTTCCGGGAGCAATAATGCTGGTAAGCTCTCAAATGAAAATTCTGCACGTGCTGAGAAGACGAAATATCCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCTCCACACTTAAAGCCATGCAGGAGCGGACACCCACTCCACAGGCAGAATTGGATATAAATCGACTTGAGAAAGAAATGGAATTGTACTCACAAGAAAAACTATGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAAAATGCACTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGTGTGGTGGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTGCTACTATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTTCTGGATGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATACCTGAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGTAGGAGCGGCTCAACTGCTACAGCCACTCTATTTGAAGGTCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTCCTCGAATACTTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTTTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACAGCTGAGTGGGAGCAACGACCAGCCCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGTTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGTTGTTTAGTGCTGCAGCAGATGTCCTTCACAGAATTGGTGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATGCTGAAGCTACTCTAGGGGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTACTGACCCATTCAACCGGTCTCATCTTACTGCGGATATGTTGATTCCCGATGATGAGCTGAAAGCAAGAATTGAGGAGTTTGTGAGGTCTCAGGAAATGAAGAAACACTTAAGCCTACAGAGTACCAAGGCCACAATTCAGACTACAAATGGGGAAAAAATGTTGATTGATTGA 2883 0.4475 MAAAKPQRTPQEVEDIVIRKIFLVSITEIAATAAAADSRIVYLELTAAEILSEGKELRLSRDCMERVLIDRLSGDFPDAAAADESPFQYLLGCYHRAHEEGKKIANMKDKSLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRNSSANSPLLPLIFSEVGGGNLFGGGSGGGAKSPPGFLEEFFRDPDFDSLEKIMKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPIGAKSLVNHEWWIPKGQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTDTRESVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKISGLTALHASSEEVTEWVNSKNPATTGATNQYNDDQKRLQQSQEASSSGSNNAGKLSNENSARAEKTKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGVVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPTDPFNRSHLTADMLIPDDELKARIEEFVRSQEMKKHLSLQSTKATIQTTNGEKMLID 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0933 960 Pfam U-box domain 874 935 IPR003613 GO:0004842|GO:0016567
Aed3g0933 960 PANTHER UBIQUITINATION FACTOR E4 248 829 IPR045132 GO:0000151|GO:0030433|GO:0034450
Aed3g0933 960 Coils Coil 483 510 - -
Aed3g0933 960 PANTHER - 248 829 - -
Aed3g0933 960 PANTHER - 828 940 - -
Aed3g0933 960 Pfam Ubiquitin elongating factor core 248 831 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Aed3g0933 960 PANTHER UBIQUITINATION FACTOR E4 828 940 IPR045132 GO:0000151|GO:0030433|GO:0034450
Aed3g0933 960 ProSiteProfiles U-box domain profile. 873 937 IPR003613 GO:0004842|GO:0016567
Aed3g0933 960 PANTHER - 1 247 - -
Aed3g0933 960 MobiDBLite consensus disorder prediction 382 424 - -
Aed3g0933 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 873 942 IPR013083 -
Aed3g0933 960 PANTHER UBIQUITINATION FACTOR E4 1 247 IPR045132 GO:0000151|GO:0030433|GO:0034450
Aed3g0933 960 SMART Ubox_2 877 930 IPR003613 GO:0004842|GO:0016567
Aed3g0933 960 SUPERFAMILY RING/U-box 866 935 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0933 1 960 U-box Gene Family AT5G15400 69.231 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0933 K10597 - gmx:100811444 1719.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0933 3 6838203 6846025 Aed3g0933 3 6838203 6846025 ECH