Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0922 ATGGGTTGCATAAGCTCCAAGAATGTGGTTGCCGGAGCTTATTCTCCGTCGCCGGCGATGCTGGACATTGCGGATGCGGGTTCCACTTACACCAAGAGCCGTTCCAGGTTGAAAGCTTCGGCATCCAAAACGGGTTCAGATGATGAGAGGAACAACAACAAACTTAAGAAGAACAGTTCAAAGAAGAGTAATGGGTCTATTGGCTTTAGACTTGGGTTGGCTCAGAGGCATGTGGAGGCTGAGCAGAACGCTGCTGGTTGGCCCCCTTGGCTCACAGCTGCTGCAGCAGAAGCCATTCAAGGGTGGATCCCTCTCAAAGCTGACTCTTTCCAAAAGTTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCTCGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGTTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATCCTCCGAAGGCTTGACCACCCTAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTTTCCAATAGCATTTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAATAAAATGTTACATGAGGCAGCTATTGAGTGGACTTGAGCATTGTCACATGCGTGGTATCATGCATAGAGACATCAAAGTATCAAATATCTTGTTAAACAATGAAGGTGTTCTCAAGTTAGGAGATTTTGGACTAGCAAATACAATTAGCACAAATAACAAGCATCAATTGACAAGTCGTGTTGTGACTCTATGGTATCGCCCTCCTGAGCTTTTGATGGGATCAACCAACTATGGAGTATCAGTGGATCTATGGAGTGTTGGTTGTGTTGAACAATTACACAAAATTTTCAAGCTGTGTGGCTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAGCTTCCTCATGCAACAATGTTCAAACCTCAGGCTAATTATGAAAGCTCTCTCCGGGAGAGGTGTGCAGATTTCCCTGTATCTGCTTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCAAAGTATTCACCTAGCAAAGAAATGGATGTCAAAAGTATGGAAGATTCATCTAGACGAGCTGCTAAAATTTTGCAAGATCCAAACAATTTGGGCAGATCAACTTCAAAAGAGGACATGCAGAACATTTCTCAAAATGTTCGTAGAGGAGATGAGGGCAAAACACATCTTGCAAAGGGAAAAGGAGGATCCATTAATCCTCATTTTGATGCTATGTCCGAGACTTCCCAAATGATTGTTGCTAATGGCAATGGCTATAGTGTGGGATCTAATAACACCTTTACATGGGTAAAAAGGAAAAAACAAGATGCATCATCAACTTTATCAGATGGATCAAGAAGCAAAATTAGTGCATTGGATACAAACTTTGCAAAAGGCACATATGACTTAACCACACAAAGGGTGTCCATGGATTTTGATCCTGCAGAACTGGTGAATGCTCAGGGTGACAGAGAGCGTGCTGTTCGTAAATCAAGGTTTGGAAGAGATGAGGCATGGATTGCAGGAGTGGTGCTTGACAAAGCATTCTGA 1587 0.431 MGCISSKNVVAGAYSPSPAMLDIADAGSTYTKSRSRLKASASKTGSDDERNNNKLKKNSSKKSNGSIGFRLGLAQRHVEAEQNAAGWPPWLTAAAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKLGDFGLANTISTNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQANYESSLRERCADFPVSAYFSTKPYACNASSLPKYSPSKEMDVKSMEDSSRRAAKILQDPNNLGRSTSKEDMQNISQNVRRGDEGKTHLAKGKGGSINPHFDAMSETSQMIVANGNGYSVGSNNTFTWVKRKKQDASSTLSDGSRSKISALDTNFAKGTYDLTTQRVSMDFDPAELVNAQGDRERAVRKSRFGRDEAWIAGVVLDKAF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0922 528 SUPERFAMILY Protein kinase-like (PK-like) 104 315 IPR011009 -
Aed3g0922 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Aed3g0922 528 SMART serkin_6 110 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0922 528 Gene3D Transferase(Phosphotransferase) domain 1 196 375 - -
Aed3g0922 528 MobiDBLite consensus disorder prediction 41 56 - -
Aed3g0922 528 MobiDBLite consensus disorder prediction 31 67 - -
Aed3g0922 528 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Aed3g0922 528 ProSiteProfiles Protein kinase domain profile. 110 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0922 528 PANTHER CYCLIN-DEPENDENT KINASE 1 338 - -
Aed3g0922 528 PANTHER CYCLIN-DEPENDENT KINASE 336 512 - -
Aed3g0922 528 PANTHER CELL DIVISION PROTEIN KINASE 336 512 - -
Aed3g0922 528 Pfam Protein kinase domain 110 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0922 528 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Aed3g0922 528 PANTHER CELL DIVISION PROTEIN KINASE 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0922 Aed-Chr3 6749093 6754395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0922 102 372 Core Cell Cycle Gene Families AT5G10270 41.056 5.27e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed3g0922 Pkinase 4.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0922 - - gmx:100790917 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0922 3 6749093 6754395 Aed3g0922 3 6749093 6754395 ECH
Aed3g0359 3 2511429 2514788 Aed3g0922 3 6749093 6754395 ECH