Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0904 ATGGGAAGATCACCATGCTGTGACAAGGTTGGTTTAAAGAAAGGACCCTGGACTCCAGAGGAAGATCAGAAGCTGTTAGCTTACATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCTGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTATTGGAACACGCATCTTAAGAAGAGGTTAACCAAAATGGGAATTGACCCCGTGACACACAAGCCTAAAAATGATGCACTTCTCTCTAGTAGTGACGGTCAATCTAAAACCGCTGCAAATCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTAGTAAGAGAGTCCAAAATACGTTCACATTCACAGCTTCAGCAGCAACAACAACAACAACTTGGAAGTAGCTCTTCTACATTTGCATCTTCATCTTCTGCTTCAACTTCAGCTTCAGCTCTCAATAATAACAAGCCAGAAGCACCACCGCCACCACCGTCGAGATCTTCCCTTGATGTTCTCAAGGCTTGGAATAATGGGGGTTGGTTGAAATCCAATGAAGGAAATGGTGGCATTAATGCAAGCAATGTTGGGGTAAGTGGGGACCTTGAGTCTCCAACTTCTACACTATCTTTCTCTGAGAATGCACCACCAGTTATGAATGGAATTGGAGGAGAAAACAACAACAACAACACCAACAACAACAATGATGATGATAGTGCAATGCCTATGATTGAGTTTGTGGGGAGTTCAGGCAATTCTTCATCTCTTGTGAAAGAAGAAGGTGAGCAAGATCAATGGAAAGGTGCTTATGATCATAGTTCCATCACTACTACTTTTACTTCTGGTCTGCATGAGTTCACAATGAACATGGAAGATGACATTGTTGAAGAAGGGTTCACCAATCTTCTCCTTAAAACAAACTCCGACGACAACCCGAGTCTATCCTCAGAGGGCAGGGGAGAGTCTAACGACAACGGCGATGGTGGTAATGGCACTAACAATAGTGACTTTTACGAAGATAACAATAATTACTGGAACAGCATTCTCAATTTAGTGAATTCTTCCCCTTCTCATTCCCCTATGTTCTAA 1242 0.438 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSSDGQSKTAANLSHMAQWESARLEAEARLVRESKIRSHSQLQQQQQQQLGSSSSTFASSSSASTSASALNNNKPEAPPPPPSRSSLDVLKAWNNGGWLKSNEGNGGINASNVGVSGDLESPTSTLSFSENAPPVMNGIGGENNNNNTNNNNDDDSAMPMIEFVGSSGNSSSLVKEEGEQDQWKGAYDHSSITTTFTSGLHEFTMNMEDDIVEEGFTNLLLKTNSDDNPSLSSEGRGESNDNGDGGNGTNNSDFYEDNNNYWNSILNLVNSSPSHSPMF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0904 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed3g0904 413 CDD SANT 69 112 IPR001005 -
Aed3g0904 413 CDD SANT 16 61 IPR001005 -
Aed3g0904 413 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed3g0904 413 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed3g0904 413 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed3g0904 413 PANTHER TRANSCRIPTION FACTOR MYB106 1 406 - -
Aed3g0904 413 MobiDBLite consensus disorder prediction 169 260 - -
Aed3g0904 413 MobiDBLite consensus disorder prediction 130 148 - -
Aed3g0904 413 MobiDBLite consensus disorder prediction 355 389 - -
Aed3g0904 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 406 - -
Aed3g0904 413 SMART sant 66 114 IPR001005 -
Aed3g0904 413 SMART sant 13 63 IPR001005 -
Aed3g0904 413 MobiDBLite consensus disorder prediction 171 207 - -
Aed3g0904 413 Gene3D - 69 116 - -
Aed3g0904 413 Gene3D - 13 66 - -
Aed3g0904 413 MobiDBLite consensus disorder prediction 119 148 - -
Aed3g0904 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed3g0904 413 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed3g0904 413 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed3g0904 413 MobiDBLite consensus disorder prediction 232 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0904 Aed-Chr3 6636790 6640459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0904 1 413 MYB Transcription Factor Family AT3G01140 53.717 2.66e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g0904 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0904 K09422 - gmx:100101835 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0904 3 6636790 6640459 Aed3g0904 3 6636790 6640459 ECH
Aed3g0904 3 6636790 6640459 Aed3g0904 3 6636790 6640459 PCT