Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0888 ATGAGAGAGGCGCAGAACGACACCGTTGTTGCAACAGAATTAGCAACAACGACAAACGACGACGAGGTGCCATCCGGCGTCGTTTTGTTCGGGAAGTACGAGTTAAGGAAGTTGTTGGGAGTTGGCGCATTCGCGAAGGTGTACCACGCGACTAGCGTGGACACGCGCCAGAGCGTGGCGGTGAAGGCAGTGAGCAAGAGCAAGGTCCTCAACGGAGGTTTCGCCGCCAACGTGGAACGCGAGATCTCCATCATGCGCCGCCTCCAGCACCCCAACATCATTAACCTCTACGAAGTACTCGCGACCAAAACAAAAATCTACTTCGTCATGGAGTTCGCCGCCGGCGGGGAGCTCTTCCACGAAGTCGCCAGCAAGGGGCGGCTCGCGGAGGACCACGCCAGATTTTACTTCCGGCAACTCATCTCCGCCGTGAAGCACTGCCACTCCAGCGGCGTCTTCCACCGCGACCTCAAGCTCGACAACCTCTTGCTCGACGAGAACGGAAACCTTAAGGTCTCCGATTTCGGGTTGAGTGCTGTCACGGGTCAGATCCGACCCGACGGGCTGTTGCACACGGTTTGTGGGACCCCCACCTACGTGGCGCCGGAGATTCTCGCGAAGAGAGGCTACGATGGTGCGAAAGTGGATCTTTGGTCGTGCGGCGTCGTTTTGTTCGCGCTCACTGCAGGGTATTTACCCTTCAATGATTACAATCCCACCGTTCTTTATAGGAAGATTTACCGCGGTCAATTCCGGTTCCCGAGGTGGATATCGCATGATCTGAGGTTCCTCTTATCACGTTTGTTGGACACGAATCCCAAGACCAGGATCACGGTTGATGAGATCCTTGAAGACACGTGGTTCAACGCGGGTGGTGAGTGCCGGTTCGACCGGGTTCTGGTCAAGAAAAAAGTTTGTCAGAAGGGATTGAGTGAAACCGGGTTCAAGTCATTGAACGCTTTTGACCTAATTTCTTTTTCAACCGGGTTGGACATGTCGGGTTTGTTCGAGGATTCGGACGGGTCGGATTCAATTGAACGGGTTATTTCAACGGTTGAACCGGAGAGAATTATGAAGAGGGTGGAGGCAGCAGCGGCGGCAGAGGAAGGGAGGGTGGTGGTGAGAAAGGAGGAGAAAGGCGATGGAGCAAAGTTAGAAGGACAAGATGGGTTTAGAAGATGTTTTGCGGAACTTATATAA 1200 0.54 MREAQNDTVVATELATTTNDDEVPSGVVLFGKYELRKLLGVGAFAKVYHATSVDTRQSVAVKAVSKSKVLNGGFAANVEREISIMRRLQHPNIINLYEVLATKTKIYFVMEFAAGGELFHEVASKGRLAEDHARFYFRQLISAVKHCHSSGVFHRDLKLDNLLLDENGNLKVSDFGLSAVTGQIRPDGLLHTVCGTPTYVAPEILAKRGYDGAKVDLWSCGVVLFALTAGYLPFNDYNPTVLYRKIYRGQFRFPRWISHDLRFLLSRLLDTNPKTRITVDEILEDTWFNAGGECRFDRVLVKKKVCQKGLSETGFKSLNAFDLISFSTGLDMSGLFEDSDGSDSIERVISTVEPERIMKRVEAAAAAEEGRVVVRKEEKGDGAKLEGQDGFRRCFAELI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0888 399 PANTHER - 15 390 - -
Aed3g0888 399 ProSiteProfiles Protein kinase domain profile. 33 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0888 399 SUPERFAMILY Protein kinase-like (PK-like) 29 291 IPR011009 -
Aed3g0888 399 Gene3D Kinase associated domain 1, KA1 319 396 - -
Aed3g0888 399 Pfam Protein kinase domain 33 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0888 399 Gene3D Transferase(Phosphotransferase) domain 1 27 318 - -
Aed3g0888 399 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 15 390 - -
Aed3g0888 399 SMART serkin_6 33 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0888 399 Pfam NAF domain 316 369 IPR004041 GO:0007165
Aed3g0888 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Aed3g0888 399 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Aed3g0888 399 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0888 Aed-Chr3 6474306 6475763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0888 29 390 CBL-interacting serine-threonine protein kinases AT2G30360 60.929 8.68e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed3g0888 Pkinase 2.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0888 - K12761 gmx:100788245 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0888 3 6474306 6475763 Aed3g0888 3 6474306 6475763 ECH