Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0875 ATGCAACGGCGTTTTCTGGGGACGGAGCTGAGCATGCCACCCTCGTACGGAGGCGGCGGCGGAAACAGCACGCGCGACACGTTCATCAGCGACGCCAACTTCGACACCAACATGGTCATCATTCTGGCGGCGCTGCTGTGCGCGCTCATATGCGCGCTGGGCCTCAACTCCATCGCGCGGTGCGCGCTGCGGTGCGGGCGGCGCTTCGGCGACGAGACGCCGGAGCAGGCGGCGGCGCGTCTCGCGGGGACTGGGCTGAAGCGCCGCGAGCTCAGCCGCATCCCGGTGGCGGTGTACGGTGCCGGAGGAGAAAACACCATTCCGGCGACGGAGTGCCCCATCTGCCTCGGCGAGTTCGAGAAAGGCGACAGGGTCCGAATGCTGCCCGAGTGCAACCACGGGTTCCACGTGAGCTGCATTGACACGTGGCTCGTGTCGCATTCCTCGTGCCCCAACTGCCGCCACTCGCTCCTCGAGAAACCCGCCCCCGCCGTGCCGGAGAATGGGTCCCTGCGGCGGAGCGACGTCGTGGTGGTGGTGGTGGAGCAGACAAGTTGA 558 0.6738 MQRRFLGTELSMPPSYGGGGGNSTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETPEQAAARLAGTGLKRRELSRIPVAVYGAGGENTIPATECPICLGEFEKGDRVRMLPECNHGFHVSCIDTWLVSHSSCPNCRHSLLEKPAPAVPENGSLRRSDVVVVVVEQTS 185
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0875 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 159 IPR013083 -
Aed3g0875 185 CDD RING-H2_EL5_like 111 154 - -
Aed3g0875 185 PANTHER RING-H2 FINGER PROTEIN ATL74 1 164 - -
Aed3g0875 185 Pfam Ring finger domain 111 154 IPR001841 -
Aed3g0875 185 SMART ring_2 112 153 IPR001841 -
Aed3g0875 185 MobiDBLite consensus disorder prediction 1 22 - -
Aed3g0875 185 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Aed3g0875 185 SUPERFAMILY RING/U-box 105 160 - -
Aed3g0875 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 164 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed3g0875 Aed-Chr3 6397389 6397946 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0875 6 181 C3H Transcription Factor Family AT3G10910 52.973 7.08e-56 172
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0875 3 6397389 6397946 Aed3g0875 3 6397389 6397946 ECH