Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0854 ATGCTACTACAGTCCTACTTTACCACAATACCAATTCTCCTTCTCCTGCTTGTGTTTCCTCACACTAAAGCTGATCTACATTCAGAAAAGCAAGCCCTCCTTGAATTTGCTGCTGCACTTCATCATGGTCCGAAAGTCAATTGGAACTCTAACACCTCAATCTGCACTTCATGGGTTGGAGTTACATGCAACCATGATGCCTCCCATGTTCTTTCTCTGAGGCTTCCAGGTGTCGGTTTGCGCGGTTCTCTCCCACCAAACACACTTGTTTCCTCTACTACCACATTGTCTCCACCAATTTTCTCTCAAAGACCAAGTGATCTGTCAAACAAGAAAATGAGCAAGGGGGTAAAAGTAGCAATTGCTTTGGGGGCTGTCACATTGCTGTTTCTTCCAGGTCTTATGATAGTGTTCTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTAGCACCTGCAGAGAAAGGTGGGAAGCTTAAGGAGGACTTTGGGAGTGGTGTGCAAGAATCTGAGAGAAATAAGCTTGTATTTTTTGATGGTTGTTCTTATAACTTTGATCTGGAGGACTTGTTAAGAGCCTCAGCTGAAGTGCTTGGGAAGGGAAGTTGTGGAACCACATATAAGGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGCTGAGAGAAGTGGCGATGGCGAAAAAGGAATTTGAACAGCAAATGGAGATTGTTCAAAGACTTGATCATCACCCAAATGTGATTCCCCTTCGTGCTTACTACTATTCCAAAGATGAAAAACTAATGGTTTATGACTACTCAACAGCAGGCAGTTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGACGAGCTCCACTAGATTGGGATACAAGATTGAAGATCATGGATGGAGCTGCTAGGGGCATTGCTCATATCCACTCAGCCAATGGGAGGAAATTAGTCCATGGCAATATAAAATCATCTAATCTGATACTCTCAATGGATCTTCAGGGCTGCATATCAGATTTTGGCATCACTCCCCTAACAAATTCCAGTGCCTCCTCCAGAAGTCCAGGCTATGGAGCACCTGAAGTCATTGAAACACGAAAATTCACTCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTCCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGTGCATGATGAAGTGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCTAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGCGTGGCAGTGATGCCTGACACAAGACCTTCAATGGAGGAAGTTTTTAGGACAATTGAAGAAATTAGAGCATCCATTTACTAA 1404 0.433 MLLQSYFTTIPILLLLLVFPHTKADLHSEKQALLEFAAALHHGPKVNWNSNTSICTSWVGVTCNHDASHVLSLRLPGVGLRGSLPPNTLVSSTTTLSPPIFSQRPSDLSNKKMSKGVKVAIALGAVTLLFLPGLMIVFCCFKKKVGEQNVAPAEKGGKLKEDFGSGVQESERNKLVFFDGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLREVAMAKKEFEQQMEIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTRETGRAPLDWDTRLKIMDGAARGIAHIHSANGRKLVHGNIKSSNLILSMDLQGCISDFGITPLTNSSASSRSPGYGAPEVIETRKFTQKSDVYSFGVLLLEMLTGKTPVQYSVHDEVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDTRPSMEEVFRTIEEIRASIY 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0854 467 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Aed3g0854 467 PANTHER OS05G0480400 PROTEIN 9 91 - -
Aed3g0854 467 ProSiteProfiles Protein kinase domain profile. 192 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0854 467 Pfam Protein kinase domain 195 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0854 467 PANTHER OS05G0588300 PROTEIN 94 465 - -
Aed3g0854 467 SUPERFAMILY Protein kinase-like (PK-like) 196 459 IPR011009 -
Aed3g0854 467 Gene3D Transferase(Phosphotransferase) domain 1 269 466 - -
Aed3g0854 467 Gene3D Phosphorylase Kinase; domain 1 159 267 - -
Aed3g0854 467 PANTHER OS05G0480400 PROTEIN 94 465 - -
Aed3g0854 467 PANTHER OS05G0588300 PROTEIN 9 91 - -
Aed3g0854 467 Gene3D Ribonuclease Inhibitor 23 115 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0854 Aed-Chr3 6239027 6241414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0854 24 89 Receptor kinase-like Gene Family AT3G08680 54.545 3.94e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed3g0854 Pkinase 4.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0854 - - gmx:100810832 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0854 3 6239027 6241414 Aed3g0854 3 6239027 6241414 ECH