Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0850 ATGGCATGGTGTTTCATGTGGAACAATTTGACAGGCACAATTCCAAAGGAAATTGGAAACATTACATCATTGGAACTCTTGCTCCTGAGTGGGAATAAGTTATCTGGTACTTTACCAGATGAGCTTGGCAACCTTTCGAATTTGGATAGATTCCAAGTTGATGAAAACCAATTGTCAGGTCCAATTCCAGAGTCATTTGCTAACATGGTCAAAGTTAAGCATCTGCTTGTGGACAACAATAACTTGTCTGGTCACCTACCACCTGAATTCCCTATGTCACTTGAGAACAATTTACTGTCTGGATCCATCCCTGCTAGCATATGGGAGAACGTGGACTCCGATACTAAATATAAACTTACAATTAATCTCCAAAACAACTCGCTCTCGGAAGTTTTGGGAAATCTGAACCCCCCATCAAATGTTACCTTAAGGCTTTCTGGCAATCCAATCTGCAAGAATTCTAACACACAAACCCCTAATGTATCTATTAAAATAGACAGTGTGAAAGAATTTACTTTCAGAGAATTGGCTCTTGCTACTAACAATTTTAGCAGCTCAACTAAAGTTGGCCAAGGAGGTTATGGGAATGTCTACAAAGGCATTTTATCTGATGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGGTTCCTTACAAGGCCAAAAAGAGTTTTTGACTGAGATTGAACTTTTATCAAGGTTACACCATCGAAACCTTGTCTCACTGATTGGATACTGCAATGAAGAAAAGGAGCAGATGCTGGTTTATGAATTCATGGCTAATGGAACCCTGAGGGACTGGATTTCTGAGAGCAGAATGGGTTTATATCCATCTGATTGCTTGGACAAGTTCTTAACTCTGTCCCTCAGTTGTTGCCAAGAGAATCCAGAGGAGAGGCCATCAATTATAGATGTGGTGAGGGAACTAGAAGACATTGTTGCAATTCTACCAAGAAGTGAATCTAGTTTCCCGAATGTTACCTTTGACAATTCAGGTGAAATACCCTCATCATCTTTAGGATCCAATTACTCAGCAAGGGAGGACCAACACCAACACAAGTACTCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACTGTTGTTCCTCGCTAA 1122 0.4073 MAWCFMWNNLTGTIPKEIGNITSLELLLLSGNKLSGTLPDELGNLSNLDRFQVDENQLSGPIPESFANMVKVKHLLVDNNNLSGHLPPEFPMSLENNLLSGSIPASIWENVDSDTKYKLTINLQNNSLSEVLGNLNPPSNVTLRLSGNPICKNSNTQTPNVSIKIDSVKEFTFRELALATNNFSSSTKVGQGGYGNVYKGILSDETLVAIKRAAEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEEKEQMLVYEFMANGTLRDWISESRMGLYPSDCLDKFLTLSLSCCQENPEERPSIIDVVRELEDIVAILPRSESSFPNVTFDNSGEIPSSSLGSNYSAREDQHQHKYSYVSGSNLVSGVIPTVVPR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0850 373 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524
Aed3g0850 373 SUPERFAMILY L domain-like 7 153 - -
Aed3g0850 373 Gene3D Ribonuclease Inhibitor 5 92 IPR032675 -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 90 - -
Aed3g0850 373 Gene3D Phosphorylase Kinase; domain 1 153 258 - -
Aed3g0850 373 ProSiteProfiles Protein kinase domain profile. 183 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 90 - -
Aed3g0850 373 SUPERFAMILY Protein kinase-like (PK-like) 153 272 IPR011009 -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 160 270 - -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 270 347 - -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 92 157 - -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 92 157 - -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 270 347 - -
Aed3g0850 373 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 160 270 - -
Aed3g0850 373 Pfam Protein tyrosine and serine/threonine kinase 186 271 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0850 Aed-Chr3 6194492 6203081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0850 168 269 Receptor kinase-like Gene Family AT5G01950 77.451 6.16e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aed3g0850 PK_Tyr_Ser-Thr 6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0850 - - gmx:100798809 214.157