Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0834 ATGGCTGGGAGTTCTGGGAATTTCTCGTTTGCATCATCTCAGTTTAGTTCACAGGTTCATGGGGACACTGATTCTGTCCAGGTTGCAGTGTGTTCTCATTGTCAAAAGGCCCTATCACCTGATAATGAGATGGCAAATGATCTTGCTAGCAGTGGTGTATGTGGTGATTGTAAATTTTTGTTACTTGAAGGTTTTGGGAATCGTACAGTTACCCAAAGCTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCCGTTGAGAATAATTTCTCACAGCAGATCCCTCATGTGGTTAATCCTGTGAGACAACATCAGTCAGCTGCATCTGGGGAGGATGATCTACTTGTAGATGGTGATACCCCTGCTTGGTCATTGCAATATGCTAGTACACATACTACCCCTAGTGGGTCTAGAAGGTGGAGGCAGGTTTTCTCTGACACTGACAGTGATGGTTTTGATAATTGGAATTCTATTTATGGTGAAAATGAGTCAAGTGTGAGTTTTAGACGGTACAGGGTTCCCCGTGGTGAAACTGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCAGATATCTCCATGGATAGACGGTACAGGGCTTCCCATGGTGAGACCGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCTGATATCTCTGTGGATACTCATAGTTTTGTAGGCACTGGAGTCTTTAATTTAGCAGATGAGGGAGATGAGTTTGACAGTGACACTGACATAGATCCAATGCATGCTGGTCTCAGCCAATGGATTTCTACTGATGATGACGATGATGATGATGATGATGAAGAAGAGGAGGAGGAGGAGGATAGGGAATGGGAATTAGCCGAGCCCGAGCCCGAGGAAGCTGAAGTCACCCGCCTTCAAATTTTTTTAACCTCCAGTCCAAGTGAGAGTAGGGATCACATTAATTCTACTGAAACTGGGGGAATGTTTACCCAGATAATCAGGGATGCCTGGCATGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCACGTGTAGTCATTGGCAAGGAACATGAGAAACATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTGGCACCCAGCACTGAAGTAAATCAACTTCCATGCTCTCACCTTTATCACATCAATTGCATTTTGCCATGGTTGAGTTCACGAAATTCATGCCCTCTTTGTCGGTATGAGCTTCCAACTGATGATAAGGATTACGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCGTGAGAGGCAGCAGATAGATGTAATCGACGATAGTTCCTCTGATGTTTCTGATGGAGATGAGGTGAATGAAGAGAATGGTAGTGGTCAAGGTGGAATACGGCATAGACTTCTGAGCTCTGGTTCTACCGTGAATTCTTCTGCAACAAGAAGTGGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATTGTTCTTGTCTTGTGGCTGGGTAATAACTCTCAGATTGAAGGAAGTAGTCGCTACATATCTGTGCAAAATCAACATGCCGTTCCTGCTTATGCCTCTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1743 0.4452 MAGSSGNFSFASSQFSSQVHGDTDSVQVAVCSHCQKALSPDNEMANDLASSGVCGDCKFLLLEGFGNRTVTQSSRRRLRGRFRHNSSESVENNFSQQIPHVVNPVRQHQSAASGEDDLLVDGDTPAWSLQYASTHTTPSGSRRWRQVFSDTDSDGFDNWNSIYGENESSVSFRRYRVPRGETDSFSHSAYGGDSDISMDRRYRASHGETDSFSHSAYGGDSDISVDTHSFVGTGVFNLADEGDEFDSDTDIDPMHAGLSQWISTDDDDDDDDDEEEEEEEDREWELAEPEPEEAEVTRLQIFLTSSPSESRDHINSTETGGMFTQIIRDAWHAFEDVDLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLAPSTEVNQLPCSHLYHINCILPWLSSRNSCPLCRYELPTDDKDYEEGKQNIDGRNVIRERQQIDVIDDSSSDVSDGDEVNEENGSGQGGIRHRLLSSGSTVNSSATRSGRGRWFFLAAAPIVSLVGIVLVLWLGNNSQIEGSSRYISVQNQHAVPAYASPNQRESRSRRWWCPF 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0834 580 SUPERFAMILY RING/U-box 382 446 - -
Aed3g0834 580 MobiDBLite consensus disorder prediction 473 498 - -
Aed3g0834 580 ProSiteProfiles Zinc finger RING-type profile. 399 440 IPR001841 -
Aed3g0834 580 Pfam Ring finger domain 399 440 IPR001841 -
Aed3g0834 580 SMART ring_2 399 439 IPR001841 -
Aed3g0834 580 MobiDBLite consensus disorder prediction 244 295 - -
Aed3g0834 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 359 446 IPR013083 -
Aed3g0834 580 MobiDBLite consensus disorder prediction 263 290 - -
Aed3g0834 580 CDD RING-H2_PA-TM-RING 398 440 - -
Aed3g0834 580 PANTHER OS06G0101300 PROTEIN 276 503 - -
Aed3g0834 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 276 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0834 Aed-Chr3 6051070 6054293 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0834 23 580 C3H Transcription Factor Family AT5G01980 41.207 7.13e-113 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0834 - - gmx:100797923 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0834 3 6051070 6054293 Aed3g0834 3 6051070 6054293 ECH