Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0823 ATGGCTGCTTGTGCTTTGTTCAGTGGTGCCGGTAACATTACCGAAGATAACAATGGAAGTGCTGCTACTACTCCTTTGACTAGTGCTTCCAACTCTAGCAACGAAGACCAACAACAACTACATGGCATCATGCCACAGCCTCCTCATTGTGAGAGAAAAATGGTTAGAAAAAGATTGGCTTCTGAGATGGAAGTCAACGTTCACGCCACTCCACCACACAACTCTTCCTCCACTAGGTTTCCTCGTCGAACCACCTCCAACATGTTAGAAAAAGGGTCCACAAGTACCCCAACAACAACTACAACAACGTTACCCTCGGCAGCAGGTACATGTAGTAATAGCAATAATAATAATAATAGTAACAGTAATAGCAGCTACCATTATAATAATAGTAACACTAGTAGTAATAATATTTCATCAAGAGATAACGTTGCCATTCCAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTTCCGCTGTTGCTCCAAACTACACCACTCACCACCAACACCATTTCCAAGGACTCGTCGAAAGCCAGGACCAACAGAACCACCCTGTCCCCGCAGTGTGTGGATTCTCAGGGCTACCACTTTTTCCATCTCAAAACCAAAGAAACCGAGACAACAACACCAACAGCACCATTAGAAACAGTAGTAGCGGTGGAAATATTGTTGACGTGGTTGCTGCTTCTTCTTCATCTTCTCCTTCCATGGATGAAACCTCAGCAGCAGCAACAAGTGGTTGGGTCGATGGTATATTGAAGGATCTCATCCACAGTTCCAACAGCGTTTCGATTCCTCAACTAATCAGCAACGTGAGGGAGATCATATACCCTTGCAACCCAAACCTCGCAATGGTTCTTGAATACAGGCTGCGTCTTCTTCTCACCGAGTCCGCCCCACAAAACAAAAGAAACGCAGAAGGAGTGCCTCTTCCTCCTTCTGTGTCCTCAGCGAAGCTCATCAATAACCGTGTCGATGGCATTGTTCCTAATAATCTGCACTTCACAGACGCTTCAGGTGCTGCTGTGGTCGTGAATCACCACATGTTGTCCAATTGGGGTGTTCCTCAACCTCAAATGACTCACCAACATGATAGCAGCAACAACAACAATAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCAACACCACCACCGCATTATTCACCACCACAAGAGAAGCAGCAGCAGCAGCCTCAAGAGGAGGATCTAGCAGCAGCAGCAGCAACAAGCAGCGCCGAGGTGGCAGCACTTTCAAGAAAGAAGAAAGAGGAGTTACGGGAACAGAAGAAGAAAGACGAAGAGGGTTTGCATCTCCTCACGTTGCTTCTTCAGTGTGCCGAAGCCGTTTCGGCTGAGAATCTAGAAGATGCAAACAAGATGCTGCTGGAAATTTCTCAGCTGTCAACACCTTTTGGAACTTCAGCGCAGCGTGTGGCAGCTTATTTCTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGCTTAGGGATATACGCCACTTTGCCACACACACACCAAAGCCACAAGGTGGCTTCGGCTTTTCAAGTGTTCAATGGCATAAGCCCTTTCGTGAAGTTCTCACATTTCACAGCAAACCAAGCTATTCAAGAAGCGTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTTGATATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTTCAGATTCTAGCTTCAAGGGCTGGTGGGGCCCCTTATGTGAGGCTCACTGGGCTTGGAACTTCAATGGAGGCACTTGAAGCAACGGGGAAGCGTTTGTCTGATTTTGCAAACAAACTTGGCCTTCCCTTTGAGTTCTTCCCTGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTAGTAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAATACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACAGTGGTGGAGCAGGATCTAAGCAACACAGGTTCATTCTTGGGGAGGTTTGTAGAAGCCATACACTACTACTCAGCATTATTTGACTCACTTGGGTCAAGCTATGGGGAAGAGAGTGAAGAGAGACATGTGGTGGAACAGCAACTACTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGAGGGCCTTCAAGGACTGGAGAACCAAAGTTTCACAACTGGAGGGAAAAGCTTCAACAGTGTGGCTTTAGAGGCATATCACTAGCTGGTAATGCTGCAACACAAGCTAGTTTACTCCTTGGAATGTTTACATCTGAGGGATATACTTTGGTTGAGGACAATGGCATTCTTAAACTTGGTTGGAAGGATCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCACCACCCTTTCATAGTGGCACTGCTGCCATTGCACATCATCACAACTAG 2484 0.4678 MAACALFSGAGNITEDNNGSAATTPLTSASNSSNEDQQQLHGIMPQPPHCERKMVRKRLASEMEVNVHATPPHNSSSTRFPRRTTSNMLEKGSTSTPTTTTTTLPSAAGTCSNSNNNNNSNSNSSYHYNNSNTSSNNISSRDNVAIPNYPTVTVTTNYSTMLLPSSTTINSSSAVAPNYTTHHQHHFQGLVESQDQQNHPVPAVCGFSGLPLFPSQNQRNRDNNTNSTIRNSSSGGNIVDVVAASSSSSPSMDETSAAATSGWVDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLAMVLEYRLRLLLTESAPQNKRNAEGVPLPPSVSSAKLINNRVDGIVPNNLHFTDASGAAVVVNHHMLSNWGVPQPQMTHQHDSSNNNNNPSVSLVTLPSPTPPPHYSPPQEKQQQQPQEEDLAAAAATSSAEVAALSRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFQILASRAGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFTSEGYTLVEDNGILKLGWKDLCLLTASAWRPPPFHSGTAAIAHHHN 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0823 827 Coils Coil 431 451 - -
Aed3g0823 827 MobiDBLite consensus disorder prediction 212 235 - -
Aed3g0823 827 MobiDBLite consensus disorder prediction 11 41 - -
Aed3g0823 827 ProSiteProfiles GRAS family profile. 446 811 IPR005202 -
Aed3g0823 827 MobiDBLite consensus disorder prediction 394 408 - -
Aed3g0823 827 MobiDBLite consensus disorder prediction 11 49 - -
Aed3g0823 827 PANTHER PROTEIN SCARECROW 157 813 - -
Aed3g0823 827 Pfam GRAS domain family 456 811 IPR005202 -
Aed3g0823 827 MobiDBLite consensus disorder prediction 369 393 - -
Aed3g0823 827 MobiDBLite consensus disorder prediction 68 144 - -
Aed3g0823 827 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 157 813 IPR005202 -
Aed3g0823 827 MobiDBLite consensus disorder prediction 369 447 - -
Aed3g0823 827 MobiDBLite consensus disorder prediction 433 447 - -
Aed3g0823 827 MobiDBLite consensus disorder prediction 66 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0823 Aed-Chr3 5886592 5890813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0823 435 815 GRAS Transcription Factor Family AT5G41920 54.731 5.06e-140 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed3g0823 GRAS 9.2e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0823 - - gmx:100806779 1219.91