Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0813 ATGAGTAGCGCTAACGGTAGTAATGGTAACAACGGCAGTGGCAACAGTGGTAGCCCTTGCGGCGCGTGCAAGTTCCTGAGAAGAAAGTGTCTTCCGAGTTGTATCTTTGCTCCGTACTTTGATTCAGAGCAAGGTACGAACCATTTCGCGGCGGTGCACAAGGTGTTTGGGGCCAGCAATGTGTCCAAGCTCCTCGTTGGCATTCCGGTGCATAGGAGGCTTGACACTGTCATCACCATTTGTTATGAAGCACAGGCACGCCTCAGAGATCCTGTTTATGGCTGTGTTGCCCACATCTTTGCCCTTCAGCAACAGGTGGTGAACTTACAAGCAGAACTCTCTTACGTGCATGGCCACATTGCTCAAATGGAGTTACCTCAACCACCACCGCTTGCTCCGTTGCAAACCACGGCGGCAATGCCAGGTTTCTCAATCGCCGATCTACCGTCAGCCACCTTTGCGGCGGCAGTGCCGGGCAGCACCTATGATCTGTCTTCACTTTTTGATCCACTGGGGCAAGCTTCATGGGCCATGCAACAGAGGGGCGCCATAGACCCACGTCAATACATGACTGCTGCTGCTCCTGCTCCATCAACCGGCGCCACTAGTGCTGATCACATCATTCAAGCAGGGGCGCGTGACTTTCCTCATAGCCATGGGTCTCCTCCATCACCTCCTGCGTCAAGCTCCAATGCTTCGCCATCTCCATCGTTTTCTTAA 720 0.5347 MSSANGSNGNNGSGNSGSPCGACKFLRRKCLPSCIFAPYFDSEQGTNHFAAVHKVFGASNVSKLLVGIPVHRRLDTVITICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYVHGHIAQMELPQPPPLAPLQTTAAMPGFSIADLPSATFAAAVPGSTYDLSSLFDPLGQASWAMQQRGAIDPRQYMTAAAPAPSTGATSADHIIQAGARDFPHSHGSPPSPPASSSNASPSPSFS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0813 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 216 - -
Aed3g0813 239 MobiDBLite consensus disorder prediction 193 239 - -
Aed3g0813 239 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Aed3g0813 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 216 - -
Aed3g0813 239 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0813 Aed-Chr3 5801251 5804563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0813 22 239 AS2 family AT2G45420 57.642 4.80e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g0813 LOB 6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0813 K21994 - gmx:100790517 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0813 3 5801251 5804563 Aed2g0863 2 6613354 6613801 PCT