Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0804 ATGGCGACTAATCTTGCTGCAACGAAGTCCACGATGACGACGTCGTCTCAGGAGAAACGACACCGTTCGATCTTCGAAGTTCCGTCGAACTTCTTCGACTCTTGTCGTCTTCTCCCTTCCCCTCACTCATCCGTTTCGGAGCACCACATCGTAGGCCAAACCAAAACCCTCGAACCACCCTCAAACGACGATGTCGTTTTGGATGCCCTTGAAAACGCTGTCGTTTCCGCTCCTAGGTGGACGTGCAACACCTGCAAGACTCAATTCGATTCCCTTCAAGAGCAGCGTTCTCATTTCAAATCCGACATTCATCGATTCAATGTGAAATTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTCAAAGATTATGATGTGTCAAGTATATCGGGATCAGAAAGTGACAATGATAGTGAAACTGAGTCGCAGACTCATAGTTTAGTGCGTGACAAATCGAGCACAAGTTTTAAACAGAAACTATTCTTCTGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATGGGACTGAAAATGTATTGTATGAGAATGAAAAGGCAGAGAACGAAGTGGTTGAGAAGTTGAAATCTTTGACTGCTGAGCCCAGAGACAATACCCGTTTGAGGATTGTTCTGCTTGTGTCTGGTGGGCACTTTGCAGGTTGTGTCTTTGATGGTGATGCTGTTGTGGCTCACAAAACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGAAAGAAACAATCATCTAAAGATGCTTCTGGCAGGGCTGCACATTCTGCTGGGGCTTCACTTCGTCGATATAATGAACTTGCATTAAAGAAGGAAGTTCAAGAACTGCTTACTGCTTGGAAACCTTATTTTGATGCTTCCAATTGCATATTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAGAGATCATACTTTACAAATCAGAAGGGTTCTATTAGAAATATTGCTTTGATTGTTCGGAGGCCTACTTTCAGGGAAGCAAAGCGTGTATATAGCCAATTGACCCAGGTGACCTATGAAGCAGATGAGAAAGAAGTTTTACAAAGCAACCAAGAGGATTCCGTATCAATTCACATTTCTAAAATAAATGTCAGTCCAATCTCCAGCAAAGGGGACATGGCTGAGTTGGATGACAAAGATAAAGCTGAAGCTGGTTCAAGTAAACAAATTGATGCATTCCCCATTTCAAGTAATGAAGAAAGTGAGAATGAGCTATCTGGTAAATCAACTCCTTTACATCAAGCAGCACAATCTGATGACACTGCAAAGGTTTTGGAGCTCCTGGAACAGGGCTTGGATCCTTGCATCAAAGATAAAAGGGGGCGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATACTTTCAGAAGGTTTATGGCATCAAATCTTGACAAATGGGATTGGCATGTAGCAAAGGTGCCTAGTGCATTGACCAAAGAAATGGAAGAAACACAAACTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCAAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCCACCTTGTCTAAGAATGATTCCAAAACTACAGAGAAGCAAGTAACTACTTCAACATCGATTAAGGGACAATCTCAACTAAAAAGTGGTGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACATGCTGCTGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGGAGAATAGCTGGCCTCAAAATTCAAGCTAATAGTGCAACCGCTGCACCTAGCATGTCAGAGCCTAAAAGTGGATTAGCTGGTGACATATACTGTTCCTGTTGTAAGTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAAGGAGATCCTAGAAGATCAATGA 1998 0.4234 MATNLAATKSTMTTSSQEKRHRSIFEVPSNFFDSCRLLPSPHSSVSEHHIVGQTKTLEPPSNDDVVLDALENAVVSAPRWTCNTCKTQFDSLQEQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDNDSETESQTHSLVRDKSSTSFKQKLFFCLQTGQRVSVWKCLIMNGTENVLYENEKAENEVVEKLKSLTAEPRDNTRLRIVLLVSGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVQELLTAWKPYFDASNCIFIHAPSSSRQLLYDGERSYFTNQKGSIRNIALIVRRPTFREAKRVYSQLTQVTYEADEKEVLQSNQEDSVSIHISKINVSPISSKGDMAELDDKDKAEAGSSKQIDAFPISSNEESENELSGKSTPLHQAAQSDDTAKVLELLEQGLDPCIKDKRGRTPYMLAHDKEVRNTFRRFMASNLDKWDWHVAKVPSALTKEMEETQTAKQAEKDAKRKARAKELKKLRKAKEKKAQAEATLSKNDSKTTEKQVTTSTSIKGQSQLKSGVQLSKEDQIRMAHAAEREKRAAAAERRIAGLKIQANSATAAPSMSEPKSGLAGDIYCSCCKSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDQ 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0804 665 ProSiteProfiles Ankyrin repeat profile. 430 462 IPR002110 GO:0005515
Aed3g0804 665 MobiDBLite consensus disorder prediction 545 575 - -
Aed3g0804 665 Pfam Vms1-associating treble clef domain 628 660 IPR041540 -
Aed3g0804 665 MobiDBLite consensus disorder prediction 413 438 - -
Aed3g0804 665 ProSitePatterns Zinc finger C2H2 type domain signature. 82 104 IPR013087 -
Aed3g0804 665 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 661 - -
Aed3g0804 665 Pfam Bacteroidetes VLRF1 release factor 224 362 IPR041175 -
Aed3g0804 665 Coils Coil 506 551 - -
Aed3g0804 665 SUPERFAMILY Ankyrin repeat 432 485 IPR036770 -
Aed3g0804 665 MobiDBLite consensus disorder prediction 509 523 - -
Aed3g0804 665 MobiDBLite consensus disorder prediction 505 576 - -
Aed3g0804 665 MobiDBLite consensus disorder prediction 1 21 - -
Aed3g0804 665 MobiDBLite consensus disorder prediction 401 438 - -
Aed3g0804 665 MobiDBLite consensus disorder prediction 137 158 - -
Aed3g0804 665 Coils Coil 586 613 - -
Aed3g0804 665 Gene3D - 397 494 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0804 19 612 C2H2 Transcription Factor Family AT1G01930 52.970 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0804 K26089 - gmx:100527709 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0804 3 5721945 5727879 Aed3g0804 3 5721945 5727879 ECH