Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0802 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTCAACTCCATCTTCACACCCGATAACAACAATTATCACAACTCCAATTCTCCTTCTCCTTCTTCTTCAACGAATCCAATGGAAGCTTCTCCTCCTCCTCCACCTTCGGTTTCGAACGAGCGCGTGGCTTACAAGCTCAAAGGCTACTTCGATTTAGCAACGCAAGAGATCGCGAAGGGCGTTAGAGCAGAGGAATGGGGCTTGGTCGACGATGCGCTTCTCCACTACCGTAACGCGCACTCGATCCTCCTCGAAGCTAATTCAACTCCCGTTCCTTCCTACATCACTTCCAGCGAACAGCAGAAGGTGCAATCGTATCGCGAGAAGATATCCAAATGGCAGAGTCAGGTTACCGAGAGATTGCAGACTCTTGCTAGACGAGCTGGTAGCTCATCTGCGAATCAGAGCACCTCAAAACTTGCCCAAACTGCTGCAGTTCCGATTAAGCCATTGAGTACTAGAAAAAATGTCTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGGGTCTGGTGTGAATTATGATGACAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGGTGGGCTTGAAAAGGCAAAGCAAGCTCTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACAGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCCGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGACATTGTGATTGTAATTGGTGCAACAAATAAGCCACAAGAATTAGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACATACCTTTACCAGATGAAAATGTTCGGAAGCTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAGGCTTGTAAAAGAGACTGAAGGATATTCCGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTGCTGACATTCTTACTGTAAGAGGACTGAGATACGAGGATTTTAAGAAGGCAATGACTATCATTAGGCCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAATGAGGAATTTGGCTCTAATTGA 1338 0.4372 MSFLQGIIDSFNSIFTPDNNNYHNSNSPSPSSSTNPMEASPPPPPSVSNERVAYKLKGYFDLATQEIAKGVRAEEWGLVDDALLHYRNAHSILLEANSTPVPSYITSSEQQKVQSYREKISKWQSQVTERLQTLARRAGSSSANQSTSKLAQTAAVPIKPLSTRKNVLQKPPQRTGQVNKVGSPKSSQGSGVNYDDKLVEMINTAIVDRSPSVRWEDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVRGLRYEDFKKAMTIIRPSLNKSKWEELERWNEEFGSN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0802 445 Gene3D - 346 423 - -
Aed3g0802 445 MobiDBLite consensus disorder prediction 166 193 - -
Aed3g0802 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 442 IPR027417 -
Aed3g0802 445 SMART smart 56 133 IPR007330 -
Aed3g0802 445 ProSitePatterns AAA-protein family signature. 317 336 IPR003960 GO:0005524|GO:0016887
Aed3g0802 445 Pfam AAA+ lid domain 370 401 IPR041569 -
Aed3g0802 445 PANTHER BNAC04G50250D PROTEIN 4 280 - -
Aed3g0802 445 PANTHER BNAC04G50250D PROTEIN 279 445 - -
Aed3g0802 445 MobiDBLite consensus disorder prediction 19 48 - -
Aed3g0802 445 Gene3D - 192 280 IPR027417 -
Aed3g0802 445 MobiDBLite consensus disorder prediction 19 34 - -
Aed3g0802 445 MobiDBLite consensus disorder prediction 165 193 - -
Aed3g0802 445 CDD MIT_spastin 56 134 - -
Aed3g0802 445 Gene3D - 281 439 IPR027417 -
Aed3g0802 445 CDD AAA 237 345 - -
Aed3g0802 445 Gene3D - 48 138 - -
Aed3g0802 445 PANTHER AAA DOMAIN-CONTAINING 4 280 - -
Aed3g0802 445 PANTHER AAA DOMAIN-CONTAINING 279 445 - -
Aed3g0802 445 SMART AAA_5 248 347 IPR003593 -
Aed3g0802 445 Pfam ATPase family associated with various cellular activities (AAA) 279 345 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0802 Aed-Chr3 5708084 5713603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0802 206 426 Calmodulin-binding Proteins AT3G56690 32.210 1.35e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0802 K13254 - gmx:100780946 783.097