Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0788 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTAACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCTAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACTGTGAACAGATCTGATGAACAAACTATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCCTTAGAAGAACTGCAACAGGTAGAGCAACAGTTGGAAAAGAGTGTAAGCAGTGTTCGTGCAAGAAAGTATGGTATCCAGCCACAGCCAGCAACAAAGGATCCAAGAGAAATTCCACCTTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAACTGTTCATCGGACTACCCAGGTCTAGCTAG 546 0.4542 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEQTMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQVEQQLEKSVSSVRARKYGIQPQPATKDPREIPPYAESSPSSEVETELFIGLPRSS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0788 181 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Aed3g0788 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Aed3g0788 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed3g0788 181 Coils Coil 87 107 - -
Aed3g0788 181 MobiDBLite consensus disorder prediction 135 181 - -
Aed3g0788 181 PANTHER MADS-BOX PROTEIN SOC1 1 143 - -
Aed3g0788 181 PANTHER MADS BOX PROTEIN 1 143 - -
Aed3g0788 181 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Aed3g0788 181 Pfam K-box region 83 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0788 181 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g0788 181 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0788 Aed-Chr3 5566120 5576667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0788 1 142 MADS-box Gene Family AT2G45660 78.169 1.62e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed3g0788 K-box 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0788 - - gmx:100037477 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0788 3 5566120 5576667 Aed2g0815 2 6249315 6269746 PCT