Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0776 ATGCAAAACTCAGACCCATCTCCTCCCCCATCCACTCCGCCGGTGGATACCGAGCCGTTCCTCAACCGGAGCCGCCGCTTCCTCCGCCGCGGACCGCCTCCTCTGCGCACAGCGGCGACGTTCTTCCGGCGGGCGAGCGGGCGGCGCATGATGCTGCGGGAGCCGTCAGTGCGCGTGCGGGAGGCGGCGGCGGCGGAGGTGGAGGGGCGGCAGAGCGAGTGGGCGTACTCGCAACCGGTGGTGGCGCTGGACGTCGCGTGGAACGCTGCGTTCCTCCTGATCGGCGCGTCGGTTCTCGCGCTCGGCGCCGAGGAGGACCCCTCCGTGCCGTTAAGAGCGTGGATTGTTGGGTACTTGCTACAAGGCGCGTTGCACTCTCTCTGCGTCGTTGTTGAGTTCACAAGAAGAAGAAGAAGAATAACAAGTGGGTCCCACTCGGATTCTAACGTTGTGGACCACGTTGAGTGGAGCTTCAGTTCCGAGAGTGACGAAGATTTTTATCCTTCGGAACAGTTTCTCGAGGGCGAGGAAAACAGCATAACAAAAAACATAGAGTCTGCAAATACAATGCTTTCATTCATATGGTGGATTGTTGGGTTCTACTGGGTGACTGCTGGTGGCCAGAGTTTAACAAGGGATGCGCCTCAGCTTTACTGGCTCTGTATCACATTTCTGGCTTTCGACGTTGTGATTGTACTCATCTGTGTTGCTGTTGCATGTCTTATTGGCATTGCTGTTTGCTGTTGCCTTCCGTGCATACTTGCTATTCTCTCTGTAATGGCAGATCAGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATACATTCAAAATAATAAAGGAATTTAAAAAAGAAGGTGATATTGAAGAATCTTCAAGAGGACTAATGACCGAATCTGAGAGTGAGACAGCTGCCGAACATGCTATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTTCCTATGATGATGGTGCTGAACTCAAAGAACTTCCTTGTAACCACCATTTTCACTGCACATGCATAGACAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGTTTAACATTTTGGGGATTGACAACCACCATCAAGAAGTTTGA 1122 0.5196 MQNSDPSPPPSTPPVDTEPFLNRSRRFLRRGPPPLRTAATFFRRASGRRMMLREPSVRVREAAAAEVEGRQSEWAYSQPVVALDVAWNAAFLLIGASVLALGAEEDPSVPLRAWIVGYLLQGALHSLCVVVEFTRRRRRITSGSHSDSNVVDHVEWSFSSESDEDFYPSEQFLEGEENSITKNIESANTMLSFIWWIVGFYWVTAGGQSLTRDAPQLYWLCITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILSVMADQEGATKEEIDQLPKYTFKIIKEFKKEGDIEESSRGLMTESESETAAEHAIALEDAECCICLSSYDDGAELKELPCNHHFHCTCIDKWLLINATCPLCKFNILGIDNHHQEV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0776 373 SUPERFAMILY RING/U-box 305 364 - -
Aed3g0776 373 Pfam Ring finger domain 318 360 IPR001841 -
Aed3g0776 373 MobiDBLite consensus disorder prediction 1 20 - -
Aed3g0776 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 364 IPR013083 -
Aed3g0776 373 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 373 - -
Aed3g0776 373 SMART ring_2 319 359 IPR001841 -
Aed3g0776 373 CDD RING-H2_RNF111_like 318 362 - -
Aed3g0776 373 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Aed3g0776 373 PANTHER TARGET OF ERK KINASE MPK-1 7 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0776 Aed-Chr3 5481595 5484431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0776 7 364 C3H Transcription Factor Family AT1G68070 47.075 3.49e-108 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0776 - - gmx:100785943 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0776 3 5481595 5484431 Aed3g0776 3 5481595 5484431 ECH