Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0773 ATGAGTTTTGGGGGGTTTCTTGAGACCAAACAAAGTGGTGGAGGTGGTAGGATCGTAGCAGATATTCCTTACAGCAACAACGGCTCAAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCACACCTACTTTGGCCAAATCCATGTTCAACTCCCCTGGCCTTTCTCTTGCACTTCAAAGTGATATAGATGGACAAGGTGATGTGAACAGATTAATGCCCGAGAGTTTTGAGCAGAATGGTCTGAGAAGGAACCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGACGGTGGTTCTGGTGATGATTTTGATGCTGCCGACAACCCACCAAGGAAAAAACGCTATCACCGACATACTCCTCAGCAAATTCAAGAGCTTGAATCGCTCTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTTAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAGCGGCACGAGAACTCACTTCTGAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCCATGAGGAATCCAATCTGCACAAACTGTGGAGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCACCTCAGGATTGAGAATGCTAGATTGAAAGACGAACTAGACCGTGTTTGTGCACTCGCTGGAAAGTTTTTGGGGCGCCCCATTTCTTCTCTAACAAGCTCAATTGGGCCTCCATTGCCAAACTCAAGCTTGGAGCTTGGTGTTGGGGGCAATGGTTTTGGAGGCTTAAGCACTGTGCCTGATTTTGGAATGGGAGGGATATCAAGTAGCCCCTTGGCCATGGTGTCACCTAATTCTTCAACTAGACCAAGCACAACAACAACAACGTTGGTGACTCCACCAGCTGGCTTTGACAGATCAGTAGAGAGGTCTATTGTTCTTGAACTTGCCTTGGCTGCAATGGATGAGTTGGTGAAGATGGCACAGACTGGTGAGCCTCTTTGGATCAGAAGCTTGGAAGGGGGAAGAGAAATTCTCAACCTTGAGGAGTACACAAGGACAATGACTCCTCCTTGCATTGGCTTGAGACCCAATGGTTTTGTCACTGAGGCCTCTAGACAAACTGGCATGGTCATCATCAACAGCTTGGCCCTTGTTGAAACATTAATGGACTCAAATCGTTGGTCAGAGATGTTCCCTTGCATGATTGCTAGAACCTCAACCGCTGAAGTTATATCTAATGGAATAAACGGGACTAGAAATGGTGCCCTTCAGCTAATGCATGCTGAGCTTCAAGTGCTTTCTCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGGTTATGGGCAGTGGTAGATGTGTCCATTGATACCATCCGAGAAACTTCTGGTGCACCCACTTTTCTCAATTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGAGGAAAGCCAAATACACCAGCTCTACAGACCCTTGTTGAGCTCAGGCATGGGGTTTGGTGCACAACGTTGGGTAGCCACTCTTCAACGCCAATGCGAGTGCCTAGCTATTCTAATGTCCTCAGCAGTTCCTTCTAGAGAACATTCAGTGGCAGCAATAAGCTCGGGTGGGAGGAGAAGCATGTTGAAGCTGGCGCAGCGGATGACGAACAATTTCTGCGCGGGAGTGTGTGCCTCGACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGGGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGACGACCCCGGCGAGCCGCCGGGGATTGTCCTCAGCGCAGCCACGTCCGTATGGCTCCCCGTCTCGCCGCAGAGGCTCTTTGACTTCCTCCGCGACGAGCGGCTCCGGAGCGAGTGGGACATCCTCTCCAACGGCGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCACTCCTTAGAGCCAGTGCTATCAATGCGAACCAGAGTAGCATGTTGATTTTGCAGGAGACGTGCACAGACGCGTCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCCATGCACGTCGTGATGAACGGCGGCGACTCTGCTTACGTGGCACTTCTTCCGTCTGGGTTTGCCATCGTACCCGACGGATCCGGCGGCGGAGAGGATCACGGCGGCGCGTCGCAGCAGAGGGCGGCGGGTGGGTGTCTCCTCACGGTGGCGTTTCAGATTCTCGTGAACAGCCTCCCGACGGCGAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCGTGCACCGTGCAGAAGATAAAAGCAGCGCTGCACAGCGAAAGCTGA 2475 0.5152 MSFGGFLETKQSGGGGRIVADIPYSNNGSNHSNDIMPSGAISQPRLATPTLAKSMFNSPGLSLALQSDIDGQGDVNRLMPESFEQNGLRRNREEEHESRSGSDNMDGGSGDDFDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICTNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSSIGPPLPNSSLELGVGGNGFGGLSTVPDFGMGGISSSPLAMVSPNSSTRPSTTTTTLVTPPAGFDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNLEEYTRTMTPPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEESQIHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAVPSREHSVAAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAINANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSGGGEDHGGASQQRAAGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHSES 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0773 824 Pfam START domain 336 561 IPR002913 GO:0008289
Aed3g0773 824 ProSiteProfiles START domain profile. 327 564 IPR002913 GO:0008289
Aed3g0773 824 SMART HOX_1 120 183 IPR001356 GO:0003677
Aed3g0773 824 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 67 821 - -
Aed3g0773 824 MobiDBLite consensus disorder prediction 82 129 - -
Aed3g0773 824 SUPERFAMILY Bet v1-like 330 561 - -
Aed3g0773 824 Gene3D - 110 195 - -
Aed3g0773 824 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Aed3g0773 824 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Aed3g0773 824 SUPERFAMILY Bet v1-like 591 817 - -
Aed3g0773 824 CDD START_ArGLABRA2_like 331 560 - -
Aed3g0773 824 MobiDBLite consensus disorder prediction 86 102 - -
Aed3g0773 824 MobiDBLite consensus disorder prediction 302 322 - -
Aed3g0773 824 CDD homeodomain 121 179 IPR001356 GO:0003677
Aed3g0773 824 SMART START_1 336 561 IPR002913 GO:0008289
Aed3g0773 824 SUPERFAMILY Homeodomain-like 105 179 IPR009057 -
Aed3g0773 824 MobiDBLite consensus disorder prediction 1 21 - -
Aed3g0773 824 Coils Coil 173 208 - -
Aed3g0773 824 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Aed3g0773 824 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 821 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0773 Aed-Chr3 5459491 5466621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0773 1 824 Homeobox Transcription Factor Family AT3G61150 64.762 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed3g0773 START 3.7e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0773 K09338 - gmx:100783614 1467.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0773 3 5459491 5466621 Aed3g0773 3 5459491 5466621 ECH
Aed2g0739 2 5327883 5334680 Aed3g0773 3 5459491 5466621 ECH