Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0754 ATGATTGCAACTGCTCCACCACACACACCACAGCCTTATAATTATTTTCTATGCTTCATATCATTTTTCTATTCACCAATTGCCATCTTGGGGCATTTCTTTGAAGGCTTTTTTGGTTTTTCTTGTGTTGTTCCTCCATTTGTGGCAGTTAATAATCGTCGATTCTGCACCTACCAAACCAAAATAATGGTGGAAGATGGCAATGATGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAGCTTGTTCCTGTTGTTCTTGACAAGGCAAGGGAGGTTAAGGTTAAGGGATTTGCTGGTAGATGGAAGATGATCATTGCGAAATTGGAACAGATCCCTTCGCGGTTATCGGATTTGTCGAGCCATCCGTGCTTCTCAAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCAATGTCAAAGACACTCGGGGAAGCAATTGAGTTGGCTGACTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTGGCTGGGAAGCTTGATCTGAATTTGAGGGATTGTGGCCTTCTGATCAAGACTGGTGTGCTTGGTGAGGCTACTCTGCCACTGGCTGTGTCTAGTTCTGTGGCAGAATCAGATGCTGCAGCACACAACAGCATAAGGGAGTTGCTGGCGCGCCTTCAGATTGGACACTTGGAGGCAAAGCACCGAGCTTTAGACAGCGTTGTTGAGGCCATGAAGGAGGATGAGAAGAGTGTTTTAGCCGTTCTTGGTAGGAGCAACATTGCTGCTTTGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTACAGAATCTGGTAGCTCTGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCGCCTCTTATAAGGCTCGTTGAATCGGGCAGCACAGTGGGGAAGGAGAAGGCCACAATATCCCTTCAGCGGTTGTCTATGTCATCCGAAACGGCCCGAGCAATCGTGGGACATGGCGGGGTTCGTCCGTTGGTTGAGCTTTGTCAAACTGGCGATTCTGTGTCACAGGCTGCGGCTGCATGCACTCTGAAGAACATATCAGCTGTGCCTGAGGTGAGACAAGCTTTGGCTGAAGAAGGGATTGTGAGGGTTATGATAAATCTGCTAAACTGTGGAATTCTGTTAGGTTCCAAAGAGCATGCTGCAGAGTGCTTGCAGAACCTCACTGCAAGCAATGAGAATCTAAGGAGGAGTGTCGTATCAGAAGGTGGTGTCAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAGGAATGCCCGGTTGGAGCATTGAGGAATCTGGTTGCATCAGTTCCCGAGGAATCCCTGGTTTCCCTTGGCTTGATCCCCCGTTTGGTCCATGTGCTGAAGTCCGGATCCTTAGGTGCTCAGCAAGCAGCCGTGGCTGCGATATGCCGGGTTTGCAGCTCAACAGACATGAAGAAAATGGTTGGTGAAGCTGGCTGCATCCCTCTCCTTGTGAAGATGCTTGAGGCCAAGTCAAACAGTGCTAGAGAGGTTGCTGCTCAAGCAATTGCAGGCTTGATGGTTGTGTCTCAGAATAGAAGAGAGGTTAAGAAGAATGATAAGAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCAAGTCCTCAGAACACTGCAAAAAAATATGCAGTTACTTGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGGGCAATTGGGTATCTGAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAGAAGCTGCATGAAAGGTTGGAAAGAGGGAAATTAAGAAGCTTGTTTAGCAAGAAATAG 1863 0.4697 MIATAPPHTPQPYNYFLCFISFFYSPIAILGHFFEGFFGFSCVVPPFVAVNNRRFCTYQTKIMVEDGNDDARSTEDWLLHAQELVPVVLDKAREVKVKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAMSKTLGEAIELADLCVKEKYEGKLRMQSDLDALAGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSVAESDAAAHNSIRELLARLQIGHLEAKHRALDSVVEAMKEDEKSVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLTESGSSENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSSETARAIVGHGGVRPLVELCQTGDSVSQAAAACTLKNISAVPEVRQALAEEGIVRVMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVVSEGGVRSLLAYLDGPLPQECPVGALRNLVASVPEESLVSLGLIPRLVHVLKSGSLGAQQAAVAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIAGLMVVSQNRREVKKNDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKK 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0754 620 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 70 620 - -
Aed3g0754 620 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Aed3g0754 620 Pfam Armadillo/beta-catenin-like repeat 491 526 IPR000225 GO:0005515
Aed3g0754 620 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 339 IPR000225 GO:0005515
Aed3g0754 620 Gene3D - 443 600 IPR011989 -
Aed3g0754 620 SUPERFAMILY ARM repeat 215 597 IPR016024 -
Aed3g0754 620 Gene3D - 206 434 IPR011989 -
Aed3g0754 620 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 70 620 - -
Aed3g0754 620 SMART arm_5 327 367 IPR000225 GO:0005515
Aed3g0754 620 SMART arm_5 245 285 IPR000225 GO:0005515
Aed3g0754 620 SMART arm_5 410 449 IPR000225 GO:0005515
Aed3g0754 620 SMART arm_5 531 573 IPR000225 GO:0005515
Aed3g0754 620 SMART arm_5 450 489 IPR000225 GO:0005515
Aed3g0754 620 SMART arm_5 368 409 IPR000225 GO:0005515
Aed3g0754 620 SMART arm_5 490 530 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0754 Aed-Chr3 5256847 5258709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0754 460 603 U-box Gene Family AT3G54790 29.167 9.82e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0754 - - gmx:100789140 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0754 3 5256847 5258709 Aed3g0754 3 5256847 5258709 ECH