Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0724 ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTTGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCAGTCACTGCAAGGGATGCCTTACGATGAGCACCTACTCCTCAATGGATGGTGTGCTCTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAGTCTGGCAATTTCAGCAAGAACTTTCAAGCAAAGTCTGCTGATAAACAAAATGAGCTGAGCAAGGCCCCCAACAGACTCTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGTTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTGACACATTCCTCCTATGCTGCACTGGATGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACAATCATGTACTCCAAGCTGCTGCAAACAAGAAGAATGCCACACCACCTCCTGAACCTGCTGAACCAGGTGCTGAAGGAGAAGAAGAGCCACCAAAGCCAGAAGAATCTGATTCTGAGGAACACACAGAAGAAAAGCCTCATAATGAGGCATAG 654 0.4434 MSFTGTTDKCKACDKTVYVVDLLTLEGIPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQAKSADKQNELSKAPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYNHVLQAAANKKNATPPPEPAEPGAEGEEEPPKPEESDSEEHTEEKPHNEA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0724 217 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Aed3g0724 217 Pfam LIM domain 105 160 IPR001781 -
Aed3g0724 217 Pfam LIM domain 10 65 IPR001781 -
Aed3g0724 217 Gene3D Cysteine Rich Protein 101 169 - -
Aed3g0724 217 MobiDBLite consensus disorder prediction 192 217 - -
Aed3g0724 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aed3g0724 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Aed3g0724 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 171 - -
Aed3g0724 217 MobiDBLite consensus disorder prediction 174 217 - -
Aed3g0724 217 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aed3g0724 217 Gene3D Cysteine Rich Protein 4 72 - -
Aed3g0724 217 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aed3g0724 217 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Aed3g0724 217 SMART lim_4 9 61 IPR001781 -
Aed3g0724 217 SMART lim_4 104 156 IPR001781 -
Aed3g0724 217 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Aed3g0724 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0724 Aed-Chr3 5069240 5071801 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed3g0724 LIM 1.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0724 - - gmx:100788569 378.252