Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0722 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGGCCTTGGACTGCTGAAGAGGATGAAATTCTTTCTAGTTTTATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGACTTAGGTGGACAAACTATCTCAGACCAGACATCAAGCGTGGTCCCTTTACTCTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCATCTCAGCTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACTCACTTGAAGAAGCGTCTGAAAAGCATGGGTCTTGACCCCAAAACCCATGAGCCAATAGCCTCATCAACTTACCCCTATCACAAGGCACCTGCATCGGTCTCCACGCGCCACATGGCTCAGTGGGAGAGTGCTAGGCTCGAAGCCGAGGCCAGGCTCTCAAATGAGTCATCAAGGTTCAGTCACAACAACACCAATCCCAACTCAGATAACAACAACAAAACCAATGATTCTGACTACTTTCTCCGAATCTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTCATATTCACCACAAAGCTGCTGATGATAATAATAATAATAATGATGATATTAACAACAACAAAATCACAGCTACTACTACTACTAGCTCCTGCGACAGTCCTGTTTTTTCTGCAGGGTCATCTTCCAACAAGTGTGAGTCAATTGCAACAAATGCAGACTTGACTTCTAATAATGCACAAGAAATTGTCACACCCTCCAGCATTGTGAAACAAGAGTTGGAGTGGGGGATTGCTCGTGGATCCGACTCTTCGAGTTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCTTGCTGGATTTTCCTATAAACAATGACATGAGCTTCTTGGAAGGAAACTCTTTCATGTGTCCACTTTAG 984 0.4441 MGRTPCCDKKGLKKGPWTAEEDEILSSFIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPKTHEPIASSTYPYHKAPASVSTRHMAQWESARLEAEARLSNESSRFSHNNTNPNSDNNNKTNDSDYFLRIWNSEVGEAFRNVHIHHKAADDNNNNNDDINNNKITATTTTSSCDSPVFSAGSSSNKCESIATNADLTSNNAQEIVTPSSIVKQELEWGIARGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0722 327 SMART sant 67 115 IPR001005 -
Aed3g0722 327 SMART sant 13 64 IPR001005 -
Aed3g0722 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aed3g0722 327 Gene3D - 69 134 - -
Aed3g0722 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed3g0722 327 MobiDBLite consensus disorder prediction 163 186 - -
Aed3g0722 327 MobiDBLite consensus disorder prediction 166 186 - -
Aed3g0722 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 321 - -
Aed3g0722 327 CDD SANT 16 62 IPR001005 -
Aed3g0722 327 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed3g0722 327 PANTHER PROTEIN ODORANT1-LIKE 1 321 - -
Aed3g0722 327 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed3g0722 327 Gene3D - 11 68 - -
Aed3g0722 327 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aed3g0722 327 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed3g0722 327 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Aed3g0722 327 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0722 Aed-Chr3 5058745 5062469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0722 1 321 MYB Transcription Factor Family AT3G61250 59.877 3.14e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g0722 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0722 K09422 - gmx:100800408 556.984