Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0712 ATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCCCCAACACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTTATGAGATCGTTGCTCTTGCCAAGAGCCTGTCCAACTTGTCAAGAACTTCCTACTCTGAGTTGGTGGGAATTCCAGCACAGAGCACATTTCAAGATGAGAAGCAAGTGTTCAACAATCAGGAATCTGACTGTCGCATGAAACCAGAACAGACACAAGAATGTGCTATGCACAAGATTTGCAGTTGCAGGCGTTGTGGAGAGAAGGCAGATGGCACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTATCCTGTATTGAGCCTGCGGTGAAAGAAATAACACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTGCTATGTGAAAGGTTAAATGATGTAAAGATCCCAGATGACGTAATTGGTGATGAAAGCTATCCTACAATTGAGGAAACACAAAATGAATTTGAAGAGAATTCAAATTGCACCTCTGATGGAATTCAAGTTTCCATAGGTGAGGAAAAAACACCTAATTGCAAGGTATGTGGAAATGAAGTGGATGGTGAAAAAATAAAAACATGTGGTCATCCGTTTTGCTCTAATAAATACTACCATGTAAGGTGTTTAACAAATAAGCAGTTGAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCCGGGTTTGCTTAGCTGATCGAGATGATGATCAAATTGTTCTGTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCGCAAACTTCTATCCCAAAAGGGAAGTGGTTCTGCACAAATTGTGATGCTGGAATACAAGCAATCCGCCAGGCTAAAAAGACATATGAGAGTAACAAGCTAAGAAGAAATGGCGAAGATGCTGCAAAGCCAAATGGTAATCTTGAAAAGAAACACAACAATAAACGTGTACGAGAACTGGAAAGTGGTGGAGCAATGGAAATGCTTTTAACTGCAGCCAACACTCTGCGTTTTGAAGAGAAAGAGGCAGCAAACCAGATCAAATCACAGAGAACATGA 1128 0.4105 MNSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGYEIVALAKSLSNLSRTSYSELVGIPAQSTFQDEKQVFNNQESDCRMKPEQTQECAMHKICSCRRCGEKADGTDCLVCDSCEEIYHVSCIEPAVKEITPHKSWYCANCTANGIGSPHENCVLCERLNDVKIPDDVIGDESYPTIEETQNEFEENSNCTSDGIQVSIGEEKTPNCKVCGNEVDGEKIKTCGHPFCSNKYYHVRCLTNKQLKSYGHCWYCPSCLCRVCLADRDDDQIVLCDGCDHAYHIYCMKPPQTSIPKGKWFCTNCDAGIQAIRQAKKTYESNKLRRNGEDAAKPNGNLEKKHNNKRVRELESGGAMEMLLTAANTLRFEEKEAANQIKSQRT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0712 375 ProSiteProfiles Zinc finger PHD-type profile. 251 301 IPR019787 -
Aed3g0712 375 Gene3D - 14 143 - -
Aed3g0712 375 PANTHER D4, ISOFORM A 2 363 - -
Aed3g0712 375 SMART PHD_3 254 299 IPR001965 -
Aed3g0712 375 SMART PHD_3 204 253 IPR001965 -
Aed3g0712 375 SMART PHD_3 93 140 IPR001965 -
Aed3g0712 375 Pfam PHD-finger 254 299 IPR019787 -
Aed3g0712 375 Pfam PHD-finger 94 141 IPR019787 -
Aed3g0712 375 PANTHER HISTONE ACETYLTRANSFERASE 2 363 - -
Aed3g0712 375 MobiDBLite consensus disorder prediction 313 338 - -
Aed3g0712 375 ProSiteProfiles Zinc finger PHD-type profile. 91 142 IPR019787 -
Aed3g0712 375 SUPERFAMILY FYVE/PHD zinc finger 253 306 IPR011011 -
Aed3g0712 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 305 IPR013083 -
Aed3g0712 375 ProSiteProfiles Zinc finger RING-type profile. 205 252 IPR001841 -
Aed3g0712 375 SUPERFAMILY FYVE/PHD zinc finger 89 140 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0712 Aed-Chr3 4998900 5001786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0712 253 321 C2H2 Transcription Factor Family AT3G01460 47.887 2.69e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed3g0712 PHD 9.9e-14 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0712 - - gmx:100795906 686.026