Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0707 ATGCCGCTTCCAGCGAAACCGATGAGGGATTCCGAGGAGTCGGCGAGTCCGTCGAACAACCTGTGGGTGGGGAATCTGGCGCCGGACGTGTCGGACGCCGATCTGATGGAGCTGTTCGCGAAATACGGCGCACTCGACAGCGTAACCTCGTATTCCGCTCGCAGTTACGCCTTCGTGTTCTTCAAGCGCGTCGAAGACGCCAAAGCAGCTAAGAACGCTCTCCAAGGCACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCTAGACCGGCAAAGGCATGTAAACAACTTTGGGTGGGTGGTATTAGCCAAGCTGTTACAAAGGAAGATTTGGAAGCTGATTTTCGCAAATTTGGTAAAATGGAGGATTTTAAGTTTTTCAGAGACAGAAATACTGCATGTGTTGAATATTTCAATTTGGAAGATGCTACTCAGGCCATGAAAATCATGAATGGGAAGCGAATAGGTGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAATCTACAAAAAGGGACCAATTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGACAGAAAAGACCACTGGTGAGGGTTCTTTGCAATGCGTATCTAGTTGCAAATACTTTTTTCTTGTGTCAACAGCATTCACAGCCTCCAATGGGGAGGAAAGGCGACAGCCAACCTAGCAATATTTTGTGGATTGGTTATCCACCTGCTGTTCAGATTGACGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTTGAGGAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAGTGACCCTGGCAGTGATTACCCTGGCTTTTTTCCTGGAAGTAATGGACCAAGACCTGATGTATTGCTGAATGAGCATCCATTTCGGCCATTACAAATGGATGCATTTGGGCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACCAAATGTACCAATGCGACCTTTTGGTCCTCACGGTGGTGTCGAATCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAATGCACTTCACAAATTTCATGATGGTAGCTCCAAGAGTAATATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTGCCAGGCTTCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACATTCAAGGATAGATGGACCCTTGCCTGTTGATGAAGCCCCATTTCCTTTGAGGAATATAGATGATCGGGGGTTAGCTCTAGAACAAACGTATGGGGTTGATCCAGCTATTGATGGAGGTGGTTCTGGTCCATATGTAAACATTCAAGGGAAGAGTCACCTTGGTTCAGTGAGCTCAAGGATTACAGCTGGAGTACATGGTGTCGTTCAACCTGATATTGATCATACTTGGCGTGGAGTGATCGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTCTTCTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATACACTGAATTCCTTCGCTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACAACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACGAGAGTTTTGAAAGTTACTGGACCTGAGCGTCTATATGGTGTGGTTCTTAAGTTTCCAACAGTGCCAAGTAGTGCATCTATGCAACAACCATCACATTTGCCTGTACAGACAACTCAGTATATGCAGCAGATACCTCCTTCGCAGACTGAATATGGTTCGATTCCTATGAAAGAGGAACAAGTTTTGCCAATGGATTATAACAGGCCATTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCACCTACAGGTGGGCACCCTTCAGTTCATTCTGTGCCTCCAGATTATGCTCCTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTTCTCCCTGCAACTACTCAATCATCTGCTACTGATGGTGCCAAGTCAGCAGTAGGTTCCTTGACCATGAAGCCTCCATTTCCTCCTGTGGCACCAAATGATGGAAATCAATCTCATTTATGGAAACAGGATAATCAAATTGTGGATCAATCTACTCATCCTCCTCAGCAGTTTAGGAGTATGTATAATGTTCACAATGCTCACTATCAACCCTATCCACCAGCATCGGCTCCTTCTGGCAATCCTGCTCAAGTGGTATCTGGTGGTTCTCATTTCCAAGATACCGCGGCCAGCTTGCAGCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATGTCATGATGCCTACTCAAAGTGGACAGGTTTCTGCATCTCCCCATGCCAGTCAGCATTATCAAGTTGAGGTCTCCCCAAGCAATCAGAAAGGTTTTGGAGCAGTGCAGGGAACAGATGGCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATCTGGCTTTCCAGCAAACTAATAATTCTATTGCTTTATCTAATCAAGTTAATGGTGCTAATGCTTCACAGCAGCAAACTTCCATGCCATATACAATGGACCAGGTAAACTCAGACACCTCCAATCAGCAACATCCTATTTTTGGAGTCAGTCAAGGCACAACAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGCAACAAGCCCCAGGAGGACATGGGCCAGGAGTTCAACAATGA 3045 0.4466 MPLPAKPMRDSEESASPSNNLWVGNLAPDVSDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKEDLEADFRKFGKMEDFKFFRDRNTACVEYFNLEDATQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLLDYGQFQGKSLGPSDAYSGQKRPLVRVLCNAYLVANTFFLCQQHSQPPMGRKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDPGSDYPGFFPGSNGPRPDVLLNEHPFRPLQMDAFGHNRPMVPNNFPGQLPPSGIMGPNVPMRPFGPHGGVESVISGPEFNEINALHKFHDGSSKSNMGPNWKRPSPPAPGMLSSPAPGARLPTRSTSGAWDVLDINHIPRDSKHSRIDGPLPVDEAPFPLRNIDDRGLALEQTYGVDPAIDGGGSGPYVNIQGKSHLGSVSSRITAGVHGVVQPDIDHTWRGVIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPTVPSSASMQQPSHLPVQTTQYMQQIPPSQTEYGSIPMKEEQVLPMDYNRPLHEDSKLPAKPVYPPTGGHPSVHSVPPDYAPNNTVAGSQAGVALTPELIATLASFLPATTQSSATDGAKSAVGSLTMKPPFPPVAPNDGNQSHLWKQDNQIVDQSTHPPQQFRSMYNVHNAHYQPYPPASAPSGNPAQVVSGGSHFQDTAASLQQQGAVSSRHMPNVMMPTQSGQVSASPHASQHYQVEVSPSNQKGFGAVQGTDGSVLYNSQAFQQPNNNLAFQQTNNSIALSNQVNGANASQQQTSMPYTMDQVNSDTSNQQHPIFGVSQGTTEVEADKNQRYQSTLQFAANLLLQIQQQQAPGGHGPGVQQ 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0707 1014 Pfam SPOC domain 524 640 IPR012921 -
Aed3g0707 1014 MobiDBLite consensus disorder prediction 1 20 - -
Aed3g0707 1014 CDD RRM3_Spen 98 167 - -
Aed3g0707 1014 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 3 1014 - -
Aed3g0707 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Aed3g0707 1014 MobiDBLite consensus disorder prediction 761 793 - -
Aed3g0707 1014 Gene3D - 94 175 IPR012677 -
Aed3g0707 1014 Gene3D - 5 93 IPR012677 -
Aed3g0707 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Aed3g0707 1014 MobiDBLite consensus disorder prediction 821 843 - -
Aed3g0707 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 301 IPR000504 GO:0003723
Aed3g0707 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Aed3g0707 1014 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Aed3g0707 1014 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Aed3g0707 1014 CDD RRM3_Spen 21 90 - -
Aed3g0707 1014 Gene3D - 225 314 IPR012677 -
Aed3g0707 1014 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 308 IPR000504 GO:0003723
Aed3g0707 1014 MobiDBLite consensus disorder prediction 399 434 - -
Aed3g0707 1014 CDD RRM3_Spen 237 306 - -
Aed3g0707 1014 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 1014 - -
Aed3g0707 1014 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Aed3g0707 1014 SUPERFAMILY RNA-binding domain, RBD 95 190 IPR035979 GO:0003676
Aed3g0707 1014 MobiDBLite consensus disorder prediction 699 733 - -
Aed3g0707 1014 SMART rrm1_1 236 304 IPR000504 GO:0003723
Aed3g0707 1014 SMART rrm1_1 20 87 IPR000504 GO:0003723
Aed3g0707 1014 SMART rrm1_1 97 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0707 Aed-Chr3 4965601 4975081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0707 2 176 Eukaryotic Initiation Factors Gene Family AT2G23350 24.757 6.73e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0707 - - gmx:100777570 1831.22