Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0700 ATGGAAGACCATGTTTTCCCTGAGGGTAAGGAAGTTCCTGGGGCTGAGTTGGAGGAATCAACATCAGTAGTAGATGGTGGAATGAAGAATTCATCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTAATGAACTTTGATACCTATGCTGGTTGGAGCAATATGACTGATCATAGTTTGGCTAATGTGTTTTCATCATTTTCCTCAGCACCTGATGACGGACTGAATTTAGAGGAACATGGCAATGCTCCATTCTTTATGACAGAAGACAGTGAAATTCACAATGCTATGGATATCCAACTTGGTTTCTTTGATGATGCAAATAACTTTGATTCTTCAAAAGAAAAACATAATGGGAATAATACCTCAGACATGTGCAATTACATAATTTCAAGGTCTTCAGGGAAATCACTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTCATGGAATCAGCTGATAGAGGAATGTTGGCACAAGTTTGGGTGCCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAGCCTTATCTGTTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCGAGGGCATTTACATTTTCTGCAGAAGGAAAGACAGGATTATCATGTCCGGGGCTTCCTGCTCGTGTGTTTATGTCGCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAGCTGAGTACTTAAGGTTGGAGCATGCAAGGAACCATGAGATTCGTGGATCTATTGCTCTTCCTATATCTGATGTGCAGTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTATCAAGGAAAAGGCTAATTTTGATAGAGAGTTAGAAATTGTTTCTCATGCACTCCAGCTTGTAAATTTAAGGACTACTTTGCCTCCACGACTTCTTCCTCAGTGTCTATCAAGTAACAAAAGATCTGCTTTAACAGAGATAATTGATGTGTTACGAGCCGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAAGAAATGAAACTGAGAGAATACGAATCAAAGAGGGTCATGCAAGTTCTAATGAAAAATGTGTACTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGGAGCTGTAGGAGGATTTGTTCATGCATGCGTTGAGCATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCTAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGCGAATATCCCCTAGTTCATCACGCGCGCAAATATAACTTGAATGCTGCAGTTGCAATTAGGCTGAGGAGTACTTATACCAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGACAGGGAGTTCAGAACAGCAACTTCTATTGGACAATCTCTCAGGTACCATGCGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGATCCAAAGGAAAAAGTCTCAGGTTTTTTTCCAATGTCCAGGAGAAACTCTCAGATAGCATTCATAAATGATGACCATGATTCGGTTCAGAAGATGTCCTTGAAGGCATCTAACATGCGAAATAATGGAATTGAAGCTGTTCATAGCCAGGCAACAAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGGAGTGCAGTGGAAAAGAATGTTAGTTTGAGCGTTCTCCAACAATACTTTTCTGGTAGTTTGAAAGATGCTGCAAAGAACATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCCCGCAAGATCAACAAAGTGAATCGTTCTTTAAAGAAGATACAGATTGTGCTTGATTCTGTCGAGGGAGTGGAAGGAGGGCTAAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGGTCAGTTGAAATTGAACCACACAAATATCTTCTGTTTCCTGAGAAAAGTGCTGTGAAAGAGTCTGCAACACAAAAAAGAGTCTCAGTAGTTTCAGCACCCGGCAGCACTAGTGAGAATTCAAATATTAAGTTGGATGATGGTGATGGTGATGATTCAAAAGCAATGGCCATGAATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACTGATGAACATAACCAACCTACTTCCTCAAGCACCACACACTCATCCAATGGCTCTGGTGGCTCAATGAGGCATGGAAGCTCATCATGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTCAAGTCAACAACTTGTGTTGACAGTGGGTCAAAATTGATTGTGAAAGCTAGCTATAGGGGTGACACTATTCGTTTCAAGTTTGATCCATCCTCAGGTTGTTTCCAGCTATATGAAGAAGTAGCAACAAGGTTCAAATTGCAAAATGGATCATTCCAGCTCAAATATCTCGATGATGAAGAGGAATGGGTTATGTTGGTGAATGACTCAGATTTGCAAGAATGTACTGAAATTTTGAATGACATTGGCACACGTTGTGTGAAGTTTCTTGTCCGTGATGTGCCTTGTGCTTTAAGCAGTCGTGGCAGCAATAGTTGCTTCTTGTCAGATAGCTCATAG 2613 0.4053 MEDHVFPEGKEVPGAELEESTSVVDGGMKNSSSEDMFSNFSELMNFDTYAGWSNMTDHSLANVFSSFSSAPDDGLNLEEHGNAPFFMTEDSEIHNAMDIQLGFFDDANNFDSSKEKHNGNNTSDMCNYIISRSSGKSLDDRMLRALSFFMESADRGMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKTGLSCPGLPARVFMSHVPEWTSNVGYYNKAEYLRLEHARNHEIRGSIALPISDVQSQVPCAVLELVTIKEKANFDRELEIVSHALQLVNLRTTLPPRLLPQCLSSNKRSALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIRNETERIRIKEGHASSNEKCVLCIEESACYVNDGAVGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICKSLRTVSDAELTGIDPKEKVSGFFPMSRRNSQIAFINDDHDSVQKMSLKASNMRNNGIEAVHSQATNGSRKQVEKKRSAVEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQIVLDSVEGVEGGLKFDPYTGGFIAGGSVEIEPHKYLLFPEKSAVKESATQKRVSVVSAPGSTSENSNIKLDDGDGDDSKAMAMNCPEQTCSISLVTDEHNQPTSSSTTHSSNGSGGSMRHGSSSCSQSFENQKHSKVKSTTCVDSGSKLIVKASYRGDTIRFKFDPSSGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEILNDIGTRCVKFLVRDVPCALSSRGSNSCFLSDSS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0700 870 MobiDBLite consensus disorder prediction 670 690 - -
Aed3g0700 870 Pfam PB1 domain 773 851 IPR000270 GO:0005515
Aed3g0700 870 MobiDBLite consensus disorder prediction 1 15 - -
Aed3g0700 870 Gene3D - 767 849 - -
Aed3g0700 870 SUPERFAMILY CAD & PB1 domains 762 854 - -
Aed3g0700 870 MobiDBLite consensus disorder prediction 719 754 - -
Aed3g0700 870 PANTHER PROTEIN NLP8 705 867 IPR045012 GO:0003700
Aed3g0700 870 PANTHER PROTEIN NLP8 9 697 IPR045012 GO:0003700
Aed3g0700 870 MobiDBLite consensus disorder prediction 670 704 - -
Aed3g0700 870 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 705 867 - -
Aed3g0700 870 Pfam RWP-RK domain 566 614 IPR003035 -
Aed3g0700 870 CDD PB1_NLP 771 851 IPR034891 -
Aed3g0700 870 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 9 697 - -
Aed3g0700 870 ProSiteProfiles RWP-RK domain profile. 546 634 IPR003035 -
Aed3g0700 870 SMART PB1_new 770 852 IPR000270 GO:0005515
Aed3g0700 870 MobiDBLite consensus disorder prediction 1 29 - -
Aed3g0700 870 ProSiteProfiles PB1 domain profile. 770 852 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0700 Aed-Chr3 4915450 4920672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0700 708 866 NLP Transcription Factor Family AT2G43500 57.500 3.85e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aed3g0700 PB1 3.3e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0700 - - gmx:100793770 1445.64