Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0686 ATGCAGAAAGTCCCAGAGAAGTTTCTGAAGCATTTGAATGAAGACTTGTCAAGTAATGCAGTTCTTATTGGCCCTTCTGGTGATCAATGGCAAGTAACTATTTTGAAGAAAGAAAATAACGTGTATATGGAGGATGGATGGTCACAATTTTTGAAAGACAACTCAGTGGTGCTTAATGAGTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAGATTTTCGGAGAGAATGGATTGGAGAGGCTATGCCTCAAAGAAGCAATAGAGGAACAAGCTGCTGCCACCCCTCAAATTTTTGGTCTTCCTTTCAGCAACAAAGGCACACTTTCTAATGGATGTAAGACAAACAAAACAATACAAAAACAAGCTGCCACCCCAAGTTTGGTGAGGACAAACAAGAATAAACAAAGAAAATCTTTTGTCCGTTCAACACACCTCCATGAATCAAAGTCTTATCAGAAAGATCTGCCTTTCAGCAACAGAACCTTGCTTTCCAAGGACTTCCCAAAGCCTCTGAGATCAACCAAAATTGAATTTTCAGAAGCATGGAAATTGGTCGAGTCCTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACAAAATGCAATGTGGAAGATCAGTGCACATTGAAAGTCCCAGAGGAGTTTCTGAAGCATTTGAATGAAGACTTGATAAGTAGTGCAGTTCTTATTGGCCCTTCTGGTGACCAATGGCAAGTAGCTGTTTTGAAGAAAGGAAATAAAGTGTATATGAAGAATGGTTGGTCACAATTTCTGAAAGACAACTCAGTGGTTCTTAATGAGTTCTTGCTTTTTACATATCATGGAGGGTACTGCTTCCATGTTCAAATTTTTTGTAAGAATGGATTGGAGAGGCTATGCCTCAAAGAAGCAAGAGAAGAACAGGCTGTCACTGCCACCCCTCAAACCTTTGATCTGCCTTTCAGCAACAGAGCCTTAATTTCTAAGGTCTTCACAAAACCTCAGAGTTCAATTAAAATTGAAAGTTCAGAAGCATGCCAATTGGCTGAGTCTTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACTAACTGCAATGTGAAACGGTGTATATTGCTTATTTCTGCTGAGTTTGGCAGAAAGTATATTCCTGAAGCAGTGAAAAAGATCTATCTTTGGAGTTCAGAAGGAAATATGTGGGAAGTGACAGTGGAATATTTTACAAATCGAAAGAGAAGGTATGCTCGGTTTAAGCCAGGATGGAAACGATTTATTCATGATAACAAGCTCATGAAAGGTGATACTTGCATTTTTGAAGTTGTCAAAGAAACCCATTGGGGTGTTCACATATTCAGAACCGGATCTAGACCACGTTAG 1374 0.3988 MQKVPEKFLKHLNEDLSSNAVLIGPSGDQWQVTILKKENNVYMEDGWSQFLKDNSVVLNEFLLFTYHGGNCFHVQIFGENGLERLCLKEAIEEQAAATPQIFGLPFSNKGTLSNGCKTNKTIQKQAATPSLVRTNKNKQRKSFVRSTHLHESKSYQKDLPFSNRTLLSKDFPKPLRSTKIEFSEAWKLVESFTSRNPHWKHLMTKCNVEDQCTLKVPEEFLKHLNEDLISSAVLIGPSGDQWQVAVLKKGNKVYMKNGWSQFLKDNSVVLNEFLLFTYHGGYCFHVQIFCKNGLERLCLKEAREEQAVTATPQTFDLPFSNRALISKVFTKPQSSIKIESSEACQLAESFTSRNPHWKHLMTNCNVKRCILLISAEFGRKYIPEAVKKIYLWSSEGNMWEVTVEYFTNRKRRYARFKPGWKRFIHDNKLMKGDTCIFEVVKETHWGVHIFRTGSRPR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0686 457 Gene3D - 191 293 IPR015300 -
Aed3g0686 457 Gene3D - 1 81 IPR015300 -
Aed3g0686 457 ProSiteProfiles B3 DNA-binding domain profile. 356 453 IPR003340 GO:0003677
Aed3g0686 457 Pfam B3 DNA binding domain 4 78 IPR003340 GO:0003677
Aed3g0686 457 Pfam B3 DNA binding domain 358 451 IPR003340 GO:0003677
Aed3g0686 457 Pfam B3 DNA binding domain 202 289 IPR003340 GO:0003677
Aed3g0686 457 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Aed3g0686 457 CDD B3_DNA 4 77 IPR003340 GO:0003677
Aed3g0686 457 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 203 451 - -
Aed3g0686 457 Gene3D - 336 453 IPR015300 -
Aed3g0686 457 ProSiteProfiles B3 DNA-binding domain profile. 199 292 IPR003340 GO:0003677
Aed3g0686 457 CDD B3_DNA 358 451 IPR003340 GO:0003677
Aed3g0686 457 SUPERFAMILY DNA-binding pseudobarrel domain 194 296 IPR015300 -
Aed3g0686 457 SUPERFAMILY DNA-binding pseudobarrel domain 350 452 IPR015300 -
Aed3g0686 457 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 3 214 - -
Aed3g0686 457 SUPERFAMILY DNA-binding pseudobarrel domain 3 80 IPR015300 -
Aed3g0686 457 CDD B3_DNA 203 290 IPR003340 GO:0003677
Aed3g0686 457 PANTHER B3 DOMAIN-CONTAINING 3 214 - -
Aed3g0686 457 PANTHER B3 DOMAIN-CONTAINING 203 451 - -
Aed3g0686 457 SMART B3_2 199 292 IPR003340 GO:0003677
Aed3g0686 457 SMART B3_2 1 80 IPR003340 GO:0003677
Aed3g0686 457 SMART B3_2 356 453 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0686 300 441 B3 DNA Binding Superfamily AT3G18990 26.389 4.78e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed3g0686 B3 1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0686 - - vra:106778427 491.5