Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0685 ATGCCGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTGTCCAACCCAACCAACTGAGGCTACCAGATAATTTTATGAGGAAATATGGGGGTGAAGTCTCTCCAATTGTTACTCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGACAGACAACAAGTATTGGTTCCTTGATGGTTGGAAAGAGTTTGTTCTACGCTATTCAATTGGTGTTGGATACTTGTTGGTATTCAGATACGAAGGAAAGTCATCTTTCAATGTCCATATTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCACGCGAAGCAGTAGTGAAGGGCTTCACTTCACAAATCGTCTGAAACTTTTTGAAGAAATGGAAGATGAAGATTCCACTGAAATCTCAGATTCATCACCTTCCCACTACCTTTCTCCCAGTTCATTGAAAAATAAAGCTCTTGCTGGATCAGTAGATAAAATGTTGCCCGGAAAGAGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTAATGCCCATTCTTCAAGAAGTGCCAATTCACTAGATAATCGGTTGACCAGAGACATAGGACTTCAGTTTAATGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATTGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGAAAATCAGATGGCCGGGAACCCTCTGCTGAACACGAAGAGGAGGTAGAAATACGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCCTTCTGTCGGGTTGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTGCCATCATGCTTTGCAGAAAAGCATTTGAATGGAGTTTCGGGATTTATTAAACTTCAGATATCTAATGGGAGACATTGGCCGGTTCGGTGCCTTTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGATGGTTTGAGTTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGTGTTACCGAGGATGTGGGACTGTTGAGCCCTCCTCCTTTGCAGCAGAACCAAAACATGAGCTCAGCTAAACTGCTGAACACTCCCTTGCAGCAACACCTCACTTCTACTAAACTGATTAGAAATTAG 1296 0.4213 MPHPSFHKLLLPSTVQPNQLRLPDNFMRKYGGEVSPIVTLSVPDGSVWRVGLKKTDNKYWFLDGWKEFVLRYSIGVGYLLVFRYEGKSSFNVHIFNLATSEINYQSATRSSSEGLHFTNRLKLFEEMEDEDSTEISDSSPSHYLSPSSLKNKALAGSVDKMLPGKSYTPPALQNLFNGSKLNSINWGEGGNAHSSRSANSLDNRLTRDIGLQFNAVEFKRSTEELKLRASIEERMKKTARKKRKSDGREPSAEHEEEVEIRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRHWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFRVTEDVGLLSPPPLQQNQNMSSAKLLNTPLQQHLTSTKLIRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0685 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Aed3g0685 431 SMART B3_2 6 98 IPR003340 GO:0003677
Aed3g0685 431 SMART B3_2 297 392 IPR003340 GO:0003677
Aed3g0685 431 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
Aed3g0685 431 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Aed3g0685 431 CDD B3_DNA 295 390 IPR003340 GO:0003677
Aed3g0685 431 Gene3D - 1 98 IPR015300 -
Aed3g0685 431 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 421 - -
Aed3g0685 431 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Aed3g0685 431 Gene3D - 274 395 IPR015300 -
Aed3g0685 431 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Aed3g0685 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Aed3g0685 431 PANTHER B3 DOMAIN-CONTAINING 1 421 - -
Aed3g0685 431 SUPERFAMILY DNA-binding pseudobarrel domain 290 391 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0685 Aed-Chr3 4845453 4849705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0685 1 396 B3 DNA Binding Superfamily AT3G18990 52.868 2.93e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed3g0685 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0685 - - gmx:100813285 782.711