Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0684 ATGCCGAGAGATGTTTCTGTTGTGATGACTACTGGTGCAGAGAGATACCCTGATTTCTTCAAAGTCTTCCATCCAGAGCGTCACTATGAAAGAATGCTTATCCCAAATGCTTTTGTGAGGTTGCCACAATTACTAGGAAGGATGTCTGAGGATGTAATCCTCAGAAATGCTAGTGGGAGAGTGTGGCATGTCAAAACATGTTACATTGGAGAGAGTGTATTTTTTTATGATGGGTGGAAGGCTTTCCATGAAGAAAACTGCTTAGAAAAAGCAGACTTTCTGGTCTTCAAGCATGACCGGAATAATGAGTTCAAGGTACTACTCCTTGAATCATCAACACAATGTGAAAAGGCTGTGGTAAAGATGGAAGAAGAGGAGGAGGAGAATGAAGAAGAGAAAGCAGCAGCACAAGAAGTTGAGGAGACAGAGATAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACATCTCTTCTGAGAGTGAGGACTATGATGATGATGATGATGATGAAGAGAATACAGAGATGGAAGAAGAAAGTGAAGAAGAACTCAGTGCTGGGTTCAAGCATCATAGAAGAGGAGCTTGCAAAAGGGATGCTGCATCAAGTTCCAACCCTAATGGTGAAGATCGTCTTCAAGACTATGTATTTGATCCAGACATGTGTATTCAGCCGGACAATAAATATTTTAAGGCAAATCTCTACAAAACTAGACCCAACGAATTGCATATTCCAGGAACTGCAATTCTAGAATTTTCCCTCATTTTTCCTGAAAAGATTACCCTTATATGTTGCCAACCCTGCCAGCGCAAGGATATTCATATAAATGATTTGAGAGATCATCATAACTTAGCACAACATACACTCGTCCACAAAAAGTACCAGGAAGTGACAGGAAGAGTGTGTAGGTGGCAAGATGAACGAATATGTATTAAGGGTTGGCAAAGCTTTTGCAGAAGGAATAAGATTGAAAAAGATGATATTTGCTTCTGCGAAGTTTTGTCAGGGGAAGATCAAATAGTGAGAACACTCCGAGTGCATGTTGCTAGAAGGACATGA 1059 0.4127 MPRDVSVVMTTGAERYPDFFKVFHPERHYERMLIPNAFVRLPQLLGRMSEDVILRNASGRVWHVKTCYIGESVFFYDGWKAFHEENCLEKADFLVFKHDRNNEFKVLLLESSTQCEKAVVKMEEEEEENEEEKAAAQEVEETEIMEEEEEEEEEEDISSESEDYDDDDDDEENTEMEEESEEELSAGFKHHRRGACKRDAASSSNPNGEDRLQDYVFDPDMCIQPDNKYFKANLYKTRPNELHIPGTAILEFSLIFPEKITLICCQPCQRKDIHINDLRDHHNLAQHTLVHKKYQEVTGRVCRWQDERICIKGWQSFCRRNKIEKDDICFCEVLSGEDQIVRTLRVHVARRT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0684 352 Pfam B3 DNA binding domain 19 107 IPR003340 GO:0003677
Aed3g0684 352 CDD B3_DNA 17 109 IPR003340 GO:0003677
Aed3g0684 352 ProSiteProfiles B3 DNA-binding domain profile. 17 112 IPR003340 GO:0003677
Aed3g0684 352 SUPERFAMILY DNA-binding pseudobarrel domain 15 111 IPR015300 -
Aed3g0684 352 SMART B3_2 19 112 IPR003340 GO:0003677
Aed3g0684 352 Coils Coil 112 157 - -
Aed3g0684 352 Gene3D - 11 115 IPR015300 -
Aed3g0684 352 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 15 342 - -
Aed3g0684 352 MobiDBLite consensus disorder prediction 118 213 - -
Aed3g0684 352 Gene3D - 218 352 IPR015300 -
Aed3g0684 352 SUPERFAMILY DNA-binding pseudobarrel domain 286 348 IPR015300 -
Aed3g0684 352 MobiDBLite consensus disorder prediction 123 182 - -
Aed3g0684 352 PANTHER B3 DOMAIN-CONTAINING 15 342 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0684 9 350 B3 DNA Binding Superfamily AT3G06160 24.501 1.24e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed3g0684 B3 2.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0684 - - gmx:100811445 437.958