Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0672 ATGATGGCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCATCTCCATCTCCAACACCAATTCTCAACAAGTCTTTCCTACCCCCGCCGTCAAACTCGCCGGCGGTTGACTTCAGTCCTCCCTTGATAGCAATGGTTGTCGTCGTCGCCGCCGCGTTTCTCGTCGTGACCTACTCCCGCCTCATCGCGCGCCACCTCAGACCGCCCATCCATCGCCTCATCCGCCGCTTCCGACGGCGTCGATTCCTCACGTCCTCCGTCGGCGACCTGGAATCACTCCCCTACGAGTCTCCCTTTGACGGGCCGCACGTGTTCTCCCCCTACGGTTTGGACGAGACGGTGATTAAGACGATACCGTTTTCGCTTTATACCGCGAAATACGACGCGCGTTTTGAACAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTCGAATTCGAAGATGAAGATTACGTGAGAACGCTTCCGGTTTGTTCACACACGTTCCACGTGGATTGCATCGATGCGTGGCTTCGCTCGCACGCTAATTGTCCTCTCTGTCGCGCCGGAGTTCTCTGCACTGATTCACCTTTTACTCCGATGATGGCAGCCAGAATCCGACCAAGCTTCGATGACACAATTCTCCACCGTATTAGTATAGATCCTCTTCTCGATCCGTTTCCTCCGCCTGCGGCGGCGGCGGCTATCTCCTCCGTGCCGGAGATTACTCCCTGCGTCGACGACCACTCTCCGAGGAGGAACCAGAACCATGTGAACGTTAATTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGATCTTATTCGTTTGGATTTGAACGGAGTCTGGCGTCGGAGAGGATGGTGATGGAACCGGCCACGGCGTCGCCGTGGCGGTATCGGAGAGGAAGTAGTAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGGTCATTGGGGAAGCCGAGGGTGTTTTCGTTTCGATATTATAGAGGGATGAAGTCACCGTTCTTCCGGCGGAGGGGTTTTTTTCCGTTGTCGGAGTCGAGCGTGAGATACGGCGGCGGGGGGAGTTCGTCGCGGCGGAGCAAATCGATAGCGAGTCCGATGTTTATGCGGTCGTCGGGGATGACGGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTGTCACCGGAGAGGTTTAACCGGAGGTGA 1191 0.5701 MMAPSQPPHWAPSPSPSPTPILNKSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLIRRFRRRRFLTSSVGDLESLPYESPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFEQESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSFDDTILHRISIDPLLDPFPPPAAAAAISSVPEITPCVDDHSPRRNQNHVNVNSEDCFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFMRSSGMTAAAFSSSRLRCGDPEALLSPERFNRR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0672 396 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 369 IPR044675 -
Aed3g0672 396 CDD RING-H2_PA-TM-RING 138 181 - -
Aed3g0672 396 MobiDBLite consensus disorder prediction 1 26 - -
Aed3g0672 396 Pfam Ring finger domain 137 181 IPR001841 -
Aed3g0672 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 185 IPR013083 -
Aed3g0672 396 SMART ring_2 139 180 IPR001841 -
Aed3g0672 396 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 369 - -
Aed3g0672 396 SUPERFAMILY RING/U-box 132 186 - -
Aed3g0672 396 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0672 Aed-Chr3 4751377 4752567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0672 31 396 C3H Transcription Factor Family AT3G18930 50.505 2.79e-98 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0672 - K19041 gmx:100806115 634.795