Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0641 ATGGATCGTGGGGACCAAATGGCGTTATCAGGGTCTTACTATATGCAGCAAAGAGGAATAGGTGGATCTGGAGCACAGGCAGAGTTACACATTTCACCAAACATTCGTCCACTGTCTAATAGTCCAAATCTAGCATTTCAATCCAGCAGCATTGGATCCACATTGGCATTGGAATCGTCGGCGATTTCGGGTCATGGTGTGAATTTGGGAGCTCCAACAACAGGGGAACCTGTGAAAAGGAAGAGAGGAAGGCCAAGGAAATATGGAACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACGTCTTCTACCCATCCTGGAGCCTTGTCACAGACCCAGAAACGGGGCAGAGGCCGCCCACCCGGGACTGGGAAGAAACAGCAACTGGCTTCTCTTGGTGAAATGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGCGTTTTGTCAGCCAATGGTGCTGTCTCAACTGTCACACTTCGTCAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGCCTCTCAGGCTCTTACTTGGTCACCGATAATGGCGGCTCACGCAATCGAACTGGTGGTCTGAGTGTGTCCCTTGCTAGTCCTGATGGCCGTGTCATTGGCGGCGGAGTTGGTGGAGTTCTTATTGCATCAAGCCCTGTTCAGACAAAGAACAAGAAAAAAGAATCCTCAGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCATCATCATCATCATGGAGTTCACAATAATAATCCAGTGGCACTGAACAACAACAACAACAACAACAACATCTCACCAAATCAAAACCTTAATCCAACCCCTCCATCTTTGAGTCCTTGGTCGGTATCACGTCCATTGGACATGCGTAATTCCCATGTCGACATTGATTTAATGCGTGGCTGA 1005 0.4826 MDRGDQMALSGSYYMQQRGIGGSGAQAELHISPNIRPLSNSPNLAFQSSSIGSTLALESSAISGHGVNLGAPTTGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSTHPGALSQTQKRGRGRPPGTGKKQQLASLGEMMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCVLSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQTKNKKKESSEGAEVAVESDHHHHHGVHNNNPVALNNNNNNNNISPNQNLNPTPPSLSPWSVSRPLDMRNSHVDIDLMRG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0641 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 295 IPR039605 GO:0003680
Aed3g0641 334 SMART AT_hook_2 79 91 IPR017956 GO:0003677
Aed3g0641 334 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Aed3g0641 334 MobiDBLite consensus disorder prediction 284 311 - -
Aed3g0641 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 295 - -
Aed3g0641 334 MobiDBLite consensus disorder prediction 254 319 - -
Aed3g0641 334 ProSiteProfiles PPC domain profile profile. 142 285 IPR005175 -
Aed3g0641 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 255 IPR005175 -
Aed3g0641 334 MobiDBLite consensus disorder prediction 258 281 - -
Aed3g0641 334 MobiDBLite consensus disorder prediction 94 113 - -
Aed3g0641 334 Gene3D - 148 278 - -
Aed3g0641 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 255 - -
Aed3g0641 334 CDD DUF296 147 236 IPR005175 -
Aed3g0641 334 MobiDBLite consensus disorder prediction 64 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0641 Aed-Chr3 4559275 4564434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0641 1 256 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 55.596 7.32e-79 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0641 - - gmx:100814615 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0641 3 4559275 4564434 Aed3g0641 3 4559275 4564434 ECH
Aed3g0641 3 4559275 4564434 Aed2g0694 2 5040694 5046263 PCT