Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0622 ATGGCTGTGGTGAGTCCTGTGCCTGCAACAACACAAAGGATGGGTTCTGCGAGGTCAATTTCTGAGGTTGGTGGAGAAATTTTGGAGGAGCCTAATCCTAATCCAAGTGTGGTTGATCAGCCAATCTATGTTGCTGTGACAAAAGAGGTGAAGGAGAGCAAATTAAATCTGATATGGACAATACACAACTCCGGAGGAAAGAAAATTTGCATTCTTTATGTTCATGTTCGTGCAACAATGATCCCCTTATTGGGAGGTAGATTCCCTGCAAGTTCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAGGCAAGGCATGCATAGGACTCTGGATGAATATCTCCGTATCTGTCAACAGATGGGGGTGCGAGCAGAGAAACTGCATGTTGAAATGGATAGCATTGAAAAGGGAATTTTAGAACTCATCTCCCAGCATGGCATTCGAAAGCTTGTTATGGGAGCAGCATCTGATAAGCACTATAATAGGAGAATGATGGACCTCAAATCTAAGAAAGCCATATCTGTTGGTAAACAAGCACCAGCTTCTTGTCATATACAGTTTGTCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTCAGATGAAGGTAGCACAGAGGTTGCATCTCCTTTGGTGCCGCAAGTGCCAAACTCTGTGAGATCATTGAGATCTCAATCTGTTACACTGGGGCAAGATCGCCGAGCAAATCTAACCAATCCTGCTCTAGAGATATTTCGCAGAGTAAGGTCTGCCAATGATGGACATGGAGCAAGCTTTACAGCTGTTTCTTCTCCAGTAGACACTGAAGGGTTTTCAACTCCACGTGATAGGATGGGTACTGAAGTTAGTTCTGATGAATCAGATAGGCTGTCAAGGATGAGTCCTTCTGCCTTGTCAACATGCTCTGACAGTGCAGTTGAACTAGCATTGCCCCCAAGTTTGATTACTGAAAGCAGTGAGAATGCATTAGAGTTGACTTTGAGTCACCTGATTATAGAGGATTTTCATCATTCATCTCCTGCCAGTACACTGGATGGTGGAATGGATGATACTATCTACGACCAGCTTGAACAGGCTAGGGTTGAGGCTGATAATGCTACGCTAAATGCATTTAAAGAAACTGTAAGGCGTAGGAAAGCTGAAAAAGATGCCTTTGAAGCTATACGCAAGGCTAAAGCATCGGAAAGCTTATATACAGAGGAGTTGAATCTGAGGAAAATGGCAGATGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATATGAAGAGCCTGAGAGACAAGGTTAAGGAAGAACTCCGCCTTGCCCATGATCAGAAGGCATCACTAGAGAATCAAATTGCATCATCTGATCTTATGATAAAGGAGTTGGAGCAGAAGATTGTATCTGCTGTAGATCTGTTACAAAGCTACAAGAATGAACGAGATGAATTGCAGATGCAGCGTGATAATGCATTGAGAGAAGCTGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCAGGCACGCATGTGCCTCAATTGTTCTCAGAATTCAATTTTTCAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCTCAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCTTGCGTCACACTGATGTGGCTATAAAAATGTTGCACTCCGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGTTGAGCAAGCTAAGGCATCCCAATCTTATCACACTCATAGGAGCCTGCCCTGAAACATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTTGCCTGCAAGGATAACACCCCTCCATTATCATGGCAAGCTCGAATTCGCGTTGCTGCTGAACTGTGCTCCGCTCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCACGGTGACTTAAAACCCTCCAACATTCTCCTTGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATCTGTCGTATATTATCAAACTGCGAGAGTTCCAGTAGCAATACTACAGAGTTTTGGAGAACTGACCCAAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCCTCGGGGGAACTTACTCCAAAGTCCGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACTGGGAGATCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGACACCGGCAAGTTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGACTCACTTGGCTTTGAGGTGTTGCGATATGAATCGAAAGAGCCGGCCAGATCTTTATTCAGATGTCTGGAGGGTACTTGATGCAATGAGGGTTTCTTCTGGAGGTTCAAACTCCTTTGGACTAAGTTCTGAAGGGCTTGTACAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCGGATGGTTTTACTTATGAAGCTGAAGCTATACGAGGATGGCTCGACGGCGGTAATGACAATTCACCAATGACTAATAGTAAGCTTGCACATCACAAACTTGTTCCCAACCGTGCTCTTCGCTCTGCAATCCAGGATTGGCTTCAAAGCCACTGA 2658 0.4375 MAVVSPVPATTQRMGSARSISEVGGEILEEPNPNPSVVDQPIYVAVTKEVKESKLNLIWTIHNSGGKKICILYVHVRATMIPLLGGRFPASSLKEEQVQAYWEEERQGMHRTLDEYLRICQQMGVRAEKLHVEMDSIEKGILELISQHGIRKLVMGAASDKHYNRRMMDLKSKKAISVGKQAPASCHIQFVCKGHLIHTRDRSSDEGSTEVASPLVPQVPNSVRSLRSQSVTLGQDRRANLTNPALEIFRRVRSANDGHGASFTAVSSPVDTEGFSTPRDRMGTEVSSDESDRLSRMSPSALSTCSDSAVELALPPSLITESSENALELTLSHLIIEDFHHSSPASTLDGGMDDTIYDQLEQARVEADNATLNAFKETVRRRKAEKDAFEAIRKAKASESLYTEELNLRKMADEELRKEKEELENMKSLRDKVKEELRLAHDQKASLENQIASSDLMIKELEQKIVSAVDLLQSYKNERDELQMQRDNALREAEELRKKQGEASGTHVPQLFSEFNFSEIKEATSNFNPSSKIGEGGYGSIFKGILRHTDVAIKMLHSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPETWALVYEYLPNGSLEDRLACKDNTPPLSWQARIRVAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGICRILSNCESSSSNTTEFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRSALGITKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLTHLALRCCDMNRKSRPDLYSDVWRVLDAMRVSSGGSNSFGLSSEGLVQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNSKLAHHKLVPNRALRSAIQDWLQSH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0622 885 SUPERFAMILY Protein kinase-like (PK-like) 507 784 IPR011009 -
Aed3g0622 885 Gene3D HUPs 36 165 IPR014729 -
Aed3g0622 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 885 IPR013083 -
Aed3g0622 885 CDD STK_N 41 194 - -
Aed3g0622 885 Gene3D Phosphorylase Kinase; domain 1 512 599 - -
Aed3g0622 885 ProSiteProfiles U-box domain profile. 814 885 IPR003613 GO:0004842|GO:0016567
Aed3g0622 885 SMART Ubox_2 818 881 IPR003613 GO:0004842|GO:0016567
Aed3g0622 885 Coils Coil 409 499 - -
Aed3g0622 885 CDD RING-Ubox_WDSUB1_like 819 860 - -
Aed3g0622 885 Pfam U-box domain 816 885 IPR003613 GO:0004842|GO:0016567
Aed3g0622 885 SUPERFAMILY RING/U-box 809 884 - -
Aed3g0622 885 Gene3D Transferase(Phosphotransferase) domain 1 600 803 - -
Aed3g0622 885 PANTHER U-BOX KINASE FAMILY PROTEIN 31 884 - -
Aed3g0622 885 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 68 159 - -
Aed3g0622 885 Pfam Protein kinase domain 529 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0622 885 PANTHER OS02G0152300 PROTEIN 31 884 - -
Aed3g0622 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Aed3g0622 885 ProSiteProfiles Protein kinase domain profile. 527 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0622 885 SMART serkin_6 527 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g0622 885 MobiDBLite consensus disorder prediction 263 301 - -
Aed3g0622 885 ProSitePatterns Protein kinases ATP-binding region signature. 533 554 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0622 Aed-Chr3 4424122 4430671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0622 351 885 U-box Gene Family AT2G45910 63.993 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed3g0622 Pkinase 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0622 - - gmx:100807515 1581.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0622 3 4424122 4430671 Aed3g0622 3 4424122 4430671 ECH
Aed2g0673 2 4868360 4874286 Aed3g0622 3 4424122 4430671 ECH
Aed3g0622 3 4424122 4430671 Aed2g0673 2 4868360 4874286 PCT