Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0610 ATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAGTCTTGCTCATGCTGTGAGTGAGAAGGTTGTAAGTCAACCGTCAATGTTACGGGCAGGAACACTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGAATATTGGCAGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTAATTGCATACTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCTAATGCTGTTATGGTTAATTGGAAGAGTGAGTTGCATACCTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGGGGGAAGGATTACCGGTCAAAATTATATTCACAAGAGATTTTGGCTATGAAGTTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGACCGGGCTAGGCTTTCAAAAATTGATTGGAAGTATATTGTAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCTTGCTTCTGACAGGAACTCCTTTACAGGTCTCTGTAGTTTTACGATGTAAGATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTCAAATCAACTGGTACCCTCCGTCTTGATCCAGAGGGTGAGAACAGTAAGGTTCAAAAGAATCCCAGCTACCAGGCAAAACAGTACAAGACATTAAATAACAGATGTATGGAGCTACGAAAAACTTGCAATCATCCATCTCTGAATTACCCGTTACTTGGTGAATTATCTACAAATATGATTGTAAAATCTTGTGGGAAATTGTGGATCTTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTTAGTACCATGACAAAACTCCTAGACCTCTTGGAAGATTACCTGAATTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAATTTGGATGACCGTGAATCAGCTATAATGGACTTTAATAGCCCGGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATTGCTAGCCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGTAGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATACGAAACAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACCTTAGAGACATTGTTACATGATGAAGAAAGGTATCAAGAAAACGTCCATAATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAATTGTTCGATCAAATGGATGAAGAACTGGATTGGCCTGAGGACATGATGCAACATGATGAGGTGCCTGAGTGGATACGGGCCAATACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAAACCATCAAAGAACACTTTATTGGCTGGTAGTATTGGCATGGAATCCAGTGAGGTGGGTTCTGAAAGGAGACGGGGGCGGCCCAAGGGAAAAAAGAATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAGTATTCTGAAGCAAGCTCTGAAGACAGAAATGAAGAATCTGCACAAGGGGAAATTGGAGAGTTTGAAGACGATGGGTATAGTGGTGCTGATGGAAATCGATTGGAAGAGGATGGTCTAACTTCTGATGCTGGATATGAAATTGCTCGTTCTTCAGAAAATGCTAGAATTAATCATGTGGTTGAAGAAGCTGGTTCCTCAGGATCATCCTCCGACAGTCAAAGGTTGACAAAGACAGTTTCACCATCAGTTTCTGCCAAAAAATTTGGTTCCCTCTCTGCATTGGATGCGAGGCCAGGCTCCATTTCGAAAATTATGGGAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCTGGTGATTCTCACATGGAGCATCAACAGTCAGGTAGCTGGATCCATGATCGTGATGAGGGTGAAGATGAACAAGTTTTGCAGCAACCCAAGATTAAGCGGAAACGTAGTCTTCGTGTTCGTCCCCGCCATGCCATGGAAAGGCACGAGGACAAGTCTGGCAGCGAGATGATTTCTCTTCAACGTGGAGAATCATCTCTTTTGGCAGATTATAAATATCAAATGCAAACAAGGATTGATCCGGAATCAAAATCATTTGGAGACTCCAATGCCAGCAAGCATGATAAGAATGAATCATCATTAAAAAATAAGCAAAAATTACCTTCAAGGAAAGTAGCTAATACATCCAAATTACATGGATCACCCAAGTCTAATCGTTTGAATTGCATGTCTGCTCCTTCAGAGGATGGTAATGAACACCCCAGAGAAAGTTGGGAGGGGAAGCATCTCAATCCAAATGGATCTTCAGCTCATGGCACTAAGACGACTGAAATCATTCAGAGAGGATGCAAAAATGTAATTAGCAAACTTCAAAGGAGAATAGACAAGGCAGGCCATCAAATTGTACCTTTGCTAACAGATTTGTGGAAGAGGAATGAGAATTCTGGGAACAGTCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTATAGCGGAGTAATGGAGCTTGTGTTTGATGTACAGTTCATGTTGAGGGGCGCAATGCATTTTTATGGATACTCATATGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGATATCTTGAAAATTGCGTTTCCAGATACAGACTTTGGAGAAGCAAGAGGTGCACTATCTTTCTCCAGCCAAGTTCCTGCCGGTGCTGTAGCATCCCCATCCCCAAGGCAAGTGACAGTTGGCCCTAGCAAAAGGCACAGAGTGACCAATGATGCTGAAACCGATCCGTGCCCTTCACAAAAGCCGCCATTCAAAGGTCATTTGCCACAGAAGGACTCAAGAACTGGAAGCGGCAGTGCACGTGAACAACCTCAGCAGGATAACCCTCCAGTGCTTGCTCATCCAGGTCAATTGGTTGTGTGCAAGAAGAAAAGAAATGACAGGGAAAAACCAGTGGGGAAGGGTAGGACCGGATCAACTGGTCCTGTTTCTCCACCTAGTGCTATAAGAAGTCCAAAGGATGCTAGACTGGCTCAACAGGGAAGGGGGGGTAGCCAGCCATCTCAACACTCAAATGGGTCTGGTGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 3501 0.4256 MIRNRFMEMNAPKDSSSVSKYYSLAHAVSEKVVSQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELHTWLPSVSCIFYAGGKDYRSKLYSQEILAMKFNVLVTTYEFIMYDRARLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQVSVVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKVQKNPSYQAKQYKTLNNRCMELRKTCNHPSLNYPLLGELSTNMIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLEDYLNWRRLVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIASHQKEDELRSGGTVDMEDELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHNVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDMMQHDEVPEWIRANTREVNAAIAALSKKPSKNTLLAGSIGMESSEVGSERRRGRPKGKKNPNYKELEDENGEYSEASSEDRNEESAQGEIGEFEDDGYSGADGNRLEEDGLTSDAGYEIARSSENARINHVVEEAGSSGSSSDSQRLTKTVSPSVSAKKFGSLSALDARPGSISKIMGDELEEGEIAVSGDSHMEHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSLRVRPRHAMERHEDKSGSEMISLQRGESSLLADYKYQMQTRIDPESKSFGDSNASKHDKNESSLKNKQKLPSRKVANTSKLHGSPKSNRLNCMSAPSEDGNEHPRESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRRIDKAGHQIVPLLTDLWKRNENSGNSLLDLRKIDQRIDRMDYSGVMELVFDVQFMLRGAMHFYGYSYEVRSEARKVHDLFFDILKIAFPDTDFGEARGALSFSSQVPAGAVASPSPRQVTVGPSKRHRVTNDAETDPCPSQKPPFKGHLPQKDSRTGSGSAREQPQQDNPPVLAHPGQLVVCKKKRNDREKPVGKGRTGSTGPVSPPSAIRSPKDARLAQQGRGGSQPSQHSNGSGGSVGWANPVKRLRTDSGKRRPSHM 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0610 1166 SMART ultradead3 40 228 IPR014001 -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 807 889 - -
Aed3g0610 1166 PANTHER ATP-DEPENDENT HELICASE BRM 16 205 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Aed3g0610 1166 Gene3D - 207 527 IPR027417 -
Aed3g0610 1166 SUPERFAMILY Bromodomain 935 993 IPR036427 GO:0005515
Aed3g0610 1166 PANTHER SNF2/RAD54 HELICASE FAMILY 16 205 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 1059 1073 - -
Aed3g0610 1166 Coils Coil 602 622 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 598 627 - -
Aed3g0610 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 205 IPR027417 -
Aed3g0610 1166 Pfam SNF2-related domain 47 206 IPR000330 GO:0005524|GO:0140658
Aed3g0610 1166 PANTHER SNF2/RAD54 HELICASE FAMILY 206 1098 - -
Aed3g0610 1166 SMART helicmild6 320 404 IPR001650 -
Aed3g0610 1166 Pfam Helicase conserved C-terminal domain 292 404 IPR001650 -
Aed3g0610 1166 CDD SF2_C_SNF 289 414 - -
Aed3g0610 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 471 IPR001650 -
Aed3g0610 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 534 IPR027417 -
Aed3g0610 1166 Gene3D - 880 1004 IPR036427 GO:0005515
Aed3g0610 1166 MobiDBLite consensus disorder prediction 1128 1145 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 731 789 - -
Aed3g0610 1166 SMART bromo_6 886 995 IPR001487 GO:0005515
Aed3g0610 1166 MobiDBLite consensus disorder prediction 1087 1101 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 814 832 - -
Aed3g0610 1166 Coils Coil 510 530 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 673 694 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 672 694 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 737 758 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 770 784 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 1012 1166 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 574 649 - -
Aed3g0610 1166 MobiDBLite consensus disorder prediction 833 859 - -
Aed3g0610 1166 Gene3D - 35 206 IPR038718 -
Aed3g0610 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 205 IPR014001 -
Aed3g0610 1166 PANTHER ATP-DEPENDENT HELICASE BRM 206 1098 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0610 Aed-Chr3 4347088 4356793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0610 306 427 RAD5 or RAD16-like Gene Family AT1G11100 40.476 1.64e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed3g0610 SNF2_N 2.9e-35 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0610 - - gmx:100811608 1760.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0610 3 4347088 4356793 Aed3g0610 3 4347088 4356793 ECH
Aed3g0610 3 4347088 4356793 Aed2g0664 2 4808002 4818872 PCT