Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0609 ATGAGTAATGGGGAGCCATTGGATTTGTATAAGCTTTTCACGGTGGTGAAGGAAAAGGGTGGTTATGATGCTGTTAGTAAGAACAAGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTGGAACTTGTTTACAGTAAACACTTGAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGATGGTAAGTTCCCTGAGTGTGGTTTATTGGATGATAAAGGTAAGTTTTGCAAGCATTTGTTGGAGGCTCAAGCTGAATCCTTGTTCGATGATTCTGGTGAGGAAGAGGTGCCGGGGCTGGATCAACTCGAGAGGAGGGTGTGTGACTGTCTGGATGGGAGGAAGTTGTGTGGTAGTAATAGAGTGACGGGTGTGAAACCTGAGTCAAATACTGCTGAACTCAAGCGAGTATATGAGTATTTGGATGGGGCAAAGTCATGTGTTAGCAATAGTGTGAAGGGAAAGTTGTGGGGTACGGATGAGAAAGTTCAGAGCGAAGGACTTGTTGATTTGGAAATGCTGAACCATGGGACGGATGAGCCCATTATCAGAAACTTGTGCAGCCTTAATACTGAGAGGGATATACTGGAAGAGTTTGATGGGGAAAAAATATTAACTGTGGATGCATCGGATGCAGAAAGCAACATGCCTAGATTGTCGGATGGAAGCAAGAGCTGTGATAATGACGACGATGACGATGACGATAGTAATGAAATCTTGAAATTGGATCCATCTGGTGTTCACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCGGAAATGCTCAGTTGGATTACTAGCATTGCTAAAAATCCTTCTGATCCTGCTGTTGGTTCAATTCCTGAAAAGTCTAAGTGGAAGTCTTACGGTAGTCAGGAGATTTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCCTTCTGAGGAAAGATTTTGAGACAATCAATGAACAGCTTAGTTGGCAGGGACAGAAAATGCATCCTTCCATGTATGATGATCGCGTTGGGGCAATGTACAATCTTAGACAGAGGTTGAAATGTGGCAAGCGAAAAACTACATCTGTAGGAGTCTCCTCAGCTTCATCTGGAGGAGGAACACATGGACATTTGGAGAGAACCCCAAGTTCTCATGCTGAAGATTGTGCTGAGAAACAGTTACCTGACTCCTGTACTGCCAGAGTGCACATCCCAGTGGGGCCAAACCATCAAGCTAAAGTGCCAGAATGGACTGACATGACTTATGAGGCCGATTCCAAGTGGTTGGGGACCCAAATATGGCCTCCAGCAACTCTTAATTCCAAACATCTTTACAAAAGGGAACCCATTGGAAAGGGAAGACCAGATTCATGTGACTGCCATGTACAAGGTTCTGTTGAGTGTGTTCGATTCCATATTTCTATGAAAAGGTCTAAAGTTAAGTTGGAATTAGGTGAGGCATTTAACCAATGGAATTTACATAAGGTAGGTGAAGAAGTTAGGGGTTCATGGACAGAGCAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTCAAAACATTTCCTACAAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTTTTTCTTTTGCAGTGCAGAGCATATCAGAATCGGCATACTCCTGATAATATTGACAGTGATGATGATGAATCAGAATTTACACCATTGAGGAAAGTTTTTGGACATCAAACACCAAAACCATGCAGCTTCACCTTGTTATCCCCCAAAAAAGCCACTTACAAAAGGGAATATAACAAGTGA 1833 0.4261 MSNGEPLDLYKLFTVVKEKGGYDAVSKNKLWDLVGEEYGLGVKVGSSVELVYSKHLSALETCLKNVADGKFPECGLLDDKGKFCKHLLEAQAESLFDDSGEEEVPGLDQLERRVCDCLDGRKLCGSNRVTGVKPESNTAELKRVYEYLDGAKSCVSNSVKGKLWGTDEKVQSEGLVDLEMLNHGTDEPIIRNLCSLNTERDILEEFDGEKILTVDASDAESNMPRLSDGSKSCDNDDDDDDDSNEILKLDPSGVHKEIFGRKRKRESKSEMLSWITSIAKNPSDPAVGSIPEKSKWKSYGSQEIWKQVLLFREAVLLRKDFETINEQLSWQGQKMHPSMYDDRVGAMYNLRQRLKCGKRKTTSVGVSSASSGGGTHGHLERTPSSHAEDCAEKQLPDSCTARVHIPVGPNHQAKVPEWTDMTYEADSKWLGTQIWPPATLNSKHLYKREPIGKGRPDSCDCHVQGSVECVRFHISMKRSKVKLELGEAFNQWNLHKVGEEVRGSWTEQEEKKFKDVVKSNPASLDKCFWDHLFKTFPTKSREDLVSYYFNVFLLQCRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKPCSFTLLSPKKATYKREYNK 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0609 610 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 605 - -
Aed3g0609 610 Gene3D - 1 70 IPR036431 GO:0003677
Aed3g0609 610 CDD SANT 504 552 IPR001005 -
Aed3g0609 610 SMART sant 501 554 IPR001005 -
Aed3g0609 610 ProSiteProfiles ELM2 domain profile. 403 526 IPR000949 -
Aed3g0609 610 MobiDBLite consensus disorder prediction 217 247 - -
Aed3g0609 610 MobiDBLite consensus disorder prediction 359 393 - -
Aed3g0609 610 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 605 - -
Aed3g0609 610 SMART ELM2_2 405 456 IPR000949 -
Aed3g0609 610 MobiDBLite consensus disorder prediction 361 378 - -
Aed3g0609 610 Pfam Myb-like DNA-binding domain 502 551 IPR001005 -
Aed3g0609 610 SUPERFAMILY ARID-like 3 72 IPR036431 GO:0003677
Aed3g0609 610 SMART bright_3 1 65 IPR001606 GO:0003677
Aed3g0609 610 Pfam ARID/BRIGHT DNA binding domain 3 60 IPR001606 GO:0003677
Aed3g0609 610 CDD ARID 3 60 - -
Aed3g0609 610 ProSiteProfiles ARID domain profile. 1 64 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0609 Aed-Chr3 4328425 4336071 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0609 4 77 ARID Transcription Factor Family AT1G20910 35.065 1.90e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed3g0609 ARID 5.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0609 - - gmx:100780550 940.643