Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed3g0605 | ATGGGAGGTTGTTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCGCCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACATCTAATGATGGTACGAATGCTGGGTTTCTTGTTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGCCCCCTCCTGTTCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTCAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGACAATTCTACTCCTACATCTCCAAGGAAGGCACAGCTATCAAAATCAAATGTAACTCAAGTATTAGTTACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATTTTGAAAATCCTAGAAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGTTTGGCTTTTGCGTAAAGGAAAGAAAGAAGAGAATGGAGGAGAGAGCAGTAGCTCATCCTTCTCTGATGAAAGCTCTTCAAGGAAAGACTCTGGCAAAACAAGTGGAGATACACTGTTAATGTTCAATAGTCCAAATTCTGCGGAGACAATCACAGAGCTGCACCATGCTCCTGAGGGTCTTGTTAACACAGATGGAGGAGACTACACTGAAATGGTTGGCCTTGCAGATTTCAAAAATGTGTTCTCTGTTGAATCCATTAAGCTTTGGACAATTGCTGGCCCTATTGCTTTCAGCATACTATGCAACTATGCTATCAATTCCTTCACAACCATCTTTGTTGGCCATCTTGGAGATTTGGAACTCTCTGCAGTTTCACTCTCTCTCTCTGTCGTTTCAAATTTCTCTTTTGGCTTCTTGGTCGAGCAAGCATCAGAACGAATGCGGAGATGGACTGGACAAGAAATTGAAATTAATATGTAA | 1011 | 0.4115 | MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNDGTNAGFLVGLNLEASMPDTFQPPPVPLPYDMVLGGSASTDSESGRETVSSFETSITREDVEESDCKAQDNSTPTSPRKAQLSKSNVTQVLVTEEEDVCPICLEEYDFENPRNLTKCEHHFHLSCILEWMERSDSCPICDQVWLLRKGKKEENGGESSSSSFSDESSSRKDSGKTSGDTLLMFNSPNSAETITELHHAPEGLVNTDGGDYTEMVGLADFKNVFSVESIKLWTIAGPIAFSILCNYAINSFTTIFVGHLGDLELSAVSLSLSVVSNFSFGFLVEQASERMRRWTGQEIEINM | 336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed3g0605 | 336 | MobiDBLite | consensus disorder prediction | 103 | 117 | - | - | |
| Aed3g0605 | 336 | ProSiteProfiles | Zinc finger RING-type profile. | 134 | 175 | IPR001841 | - | |
| Aed3g0605 | 336 | Pfam | Ring finger domain | 133 | 174 | IPR001841 | - | |
| Aed3g0605 | 336 | SUPERFAMILY | RING/U-box | 127 | 181 | - | - | |
| Aed3g0605 | 336 | SMART | ring_2 | 134 | 174 | IPR001841 | - | |
| Aed3g0605 | 336 | MobiDBLite | consensus disorder prediction | 69 | 117 | - | - | |
| Aed3g0605 | 336 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 186 | IPR013083 | - | |
| Aed3g0605 | 336 | MobiDBLite | consensus disorder prediction | 185 | 214 | - | - | |
| Aed3g0605 | 336 | MobiDBLite | consensus disorder prediction | 72 | 90 | - | - | |
| Aed3g0605 | 336 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 178 | - | - | |
| Aed3g0605 | 336 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED | 1 | 178 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed3g0605 | Aed-Chr3 | 4285622 | 4295096 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed3g0605 | 1 | 176 | C3H Transcription Factor Family | AT4G00335 | 58.242 | 3.32e-66 | 205 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed3g0605 | - | - | gmx:100812687 | 352.058 |
Event-related genes