Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0601 ATGGGGTTTCCAGTTGGGTACCCGGAACTCTTAGTCCCGAAGATGTTCCTCCACGCGCTCTCCCTCCTCGCGTGGCTCCGCTCGCTCGTCTTCGCACTCTTCCGCCTACTCCGCCTCTCCGACCTCCTCGACACCGACTCCTCCTCCGCCGCCGCTGACATCCAGCCGCCTCCGCCGCGCGCCCCGACGCTCTCCGCCCTCCTAATCCGCGAGTTCCTCCCCGTCGCGGCCTTCAACGACCTGGACTCTCCGCCGTCTCCGACGACGGGGTGCGCCGTGTGCCTGAGCGAATTCTCCGGCGAGGAGGAAATCAGGAGCATGGCGAACTGCAAGCACATTTTCCACAGCGTGTGCGTGGACCGTTGGATCGATCACGATCAGAAAACGTGTCCGCTCTGCAGAACACCGTTCGTGCCGCATCACAAGCTCGAAGAATATAATCAGCGATTATGGGCCGCTTCTGGAGTTTCGCAGTTTTACCAAGACGATTACACGGCTTCCCTCTGA 507 0.6134 MGFPVGYPELLVPKMFLHALSLLAWLRSLVFALFRLLRLSDLLDTDSSSAAADIQPPPPRAPTLSALLIREFLPVAAFNDLDSPPSPTTGCAVCLSEFSGEEEIRSMANCKHIFHSVCVDRWIDHDQKTCPLCRTPFVPHHKLEEYNQRLWAASGVSQFYQDDYTASL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0601 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 139 IPR013083 -
Aed3g0601 168 Pfam Ring finger domain 91 134 IPR001841 -
Aed3g0601 168 SMART ring_2 91 133 IPR001841 -
Aed3g0601 168 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 165 - -
Aed3g0601 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Aed3g0601 168 SUPERFAMILY RING/U-box 90 144 - -
Aed3g0601 168 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0601 Aed-Chr3 4270622 4271128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0601 1 154 C3H Transcription Factor Family AT1G63840 47.097 5.30e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0601 K16281 - gmx:100813224 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0601 3 4270622 4271128 Aed2g0652 2 4712839 4713357 PCT