Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0596 ATGACGACGACGACGGAGGGAAAGAGAGGCTCCGGAAACGAGTCGGAGGAAGAGGAGGAGGAGGATGACCCGGTGAAGGAGATCCAGCGAGTCATAGAATCGGTGGTTCAATTCGGCGAATACCGGAGGACGCAGAGGAAGGAGAGCCACAACCTCGTGCGTCGCTTCAAGCTCATGCTGCCGCTCTTGGAAGAGCTTCGAGAACTTCCACAACCCTTCCCCGAAACCGGCATCTCTTGGTTGACCAAACTCAAGGACGCGCTTCTCTTCGCCAAGGATTTGTTGAAACTTTGCAGCCAAGGAAGCAAGATTCACCTCTCCTCGGAGATCGAGGGAGTTATGATCACGTTTCATAGAGTGTATGAAAAATTAAGCCAAGCGTTTGATGGCGTGCCTTGTGAGGAATTGGGTGTCTCGGACGAAGTCAAAGAACAGCTTGACCTAATGCACGTGCAACTGAAGCGAGCGAGGAGAAGAACTGATACACAGGACATTGAACTTGCAATGGATATGATGGTGGTGTTCTCTGATGAGGATGAAAGAAACTCTGACAGTGTTATCATAGAGAGGCTGGCAAAAAAGCTGGAGCTTCATAGTGTTGAGGATCTCAACATAGAAACATTGGCTGTTAAGAACCTTGCTGCTGAGAGAAAAGGGCAACAGGCTGAGAGCACTCAGCGAATCATAAACCTTCTTAACAAATTCAAACGAGTTGCAGGCATGGAAGAAACCAGCATCTTTGATGATCCTGCCGTTCCCAAAAAGCTTGAGAGGCGCACCTCTTTGGTCATCCCTCATGAGTTCCTCTGCCCAATTACACTAGAAATCATGACAGATCCTGTTATTGTCACAACTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCCAACCACAACACATGCCCAAAGACCAGGCAACCTTTGGAACACCTATCATTGGCACCAAACTGTGCCTTGAAAAGCTTGATTGAAGAATGGTGTGAGAACAACAACTTCCAACTCCCCAAGAAGTACAGATCTTCAAGTCAAGAAAGCTGTCCCATAGACAGCAAAGAGGAGATTCCAGCCTTGGTTGAGAACCTTTCATCAATTCATTTAGAAAAGCAGAGAAAGGCAGTGGAGAAGATACGTATGTTATCAAAGGAAAATCCTGAGAATAGGGTTTTGGTTGCCGAACATGGAGGATTGCCACCACTAGTGCAACTCCTGTCATATCCAGATTCAAAAATACAAGAACATGCTGTGACAGCACTTTTGAACTTATCAATTGATGAGGGTAACAAGACACTTATATCCACAGAAGGTGCCATTCCAGCTATCATAGAAGTTTTGGGGAGAGGGAGTGTTGTGGCTAAGGAAAACTCAGCAGCAACATTGTTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTTCCCCCCTTTGGTGGATTTGTTGATGAATGGAACAGTTAGAGGGAAGAAAGATGCTGTGACTGCTCTTTTTAACTTATCATTAAACCATGCAAATAAAGGTAGGGCAGTTAGAGCTGGCATTGTGGCACCCTTGCTTCAATTGCTCAAAGACAAAAACTTGGGAATGATTGATGAGGCTCTCTCCATTCTGTTACTCCTTGTGTCAAATTCAGAAGCAAGACAAGAGATTGGACAGCTTAGTTTCATTGAAACACTTGTTGAGTTCATGAGTGAAGGGAGTCCTAAGAACAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGCTCAAATAACTCATCTTTTACATTGTCAGCACTTCAGTTTGGAGTGTATGAGTCTTTAATGGAGATCAAACAAAATGGAACAAGTAGAGCACAGAGGAAAGCAATTGCAATCTTAGATCTTATAAGCAGGAGCGAGCAAATTTAA 1914 0.4451 MTTTTEGKRGSGNESEEEEEEDDPVKEIQRVIESVVQFGEYRRTQRKESHNLVRRFKLMLPLLEELRELPQPFPETGISWLTKLKDALLFAKDLLKLCSQGSKIHLSSEIEGVMITFHRVYEKLSQAFDGVPCEELGVSDEVKEQLDLMHVQLKRARRRTDTQDIELAMDMMVVFSDEDERNSDSVIIERLAKKLELHSVEDLNIETLAVKNLAAERKGQQAESTQRIINLLNKFKRVAGMEETSIFDDPAVPKKLERRTSLVIPHEFLCPITLEIMTDPVIVTTGQTYERESIEKWFQSNHNTCPKTRQPLEHLSLAPNCALKSLIEEWCENNNFQLPKKYRSSSQESCPIDSKEEIPALVENLSSIHLEKQRKAVEKIRMLSKENPENRVLVAEHGGLPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKTLISTEGAIPAIIEVLGRGSVVAKENSAATLFSLSMLDEIKEIVGQSNGFPPLVDLLMNGTVRGKKDAVTALFNLSLNHANKGRAVRAGIVAPLLQLLKDKNLGMIDEALSILLLLVSNSEARQEIGQLSFIETLVEFMSEGSPKNKECAASVLLELCSNNSSFTLSALQFGVYESLMEIKQNGTSRAQRKAIAILDLISRSEQI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0596 637 Gene3D - 338 636 IPR011989 -
Aed3g0596 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
Aed3g0596 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 480 522 IPR000225 GO:0005515
Aed3g0596 637 Pfam U-box domain 264 334 IPR003613 GO:0004842|GO:0016567
Aed3g0596 637 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Aed3g0596 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Aed3g0596 637 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 18 635 - -
Aed3g0596 637 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Aed3g0596 637 Coils Coil 139 159 - -
Aed3g0596 637 PANTHER U BOX DOMAIN-CONTAINING 18 635 - -
Aed3g0596 637 CDD RING-Ubox_PUB 268 310 IPR045210 -
Aed3g0596 637 SUPERFAMILY ARM repeat 357 633 IPR016024 -
Aed3g0596 637 MobiDBLite consensus disorder prediction 1 26 - -
Aed3g0596 637 SMART arm_5 469 509 IPR000225 GO:0005515
Aed3g0596 637 SMART arm_5 510 550 IPR000225 GO:0005515
Aed3g0596 637 SMART arm_5 551 591 IPR000225 GO:0005515
Aed3g0596 637 SMART arm_5 428 468 IPR000225 GO:0005515
Aed3g0596 637 SMART arm_5 387 427 IPR000225 GO:0005515
Aed3g0596 637 SUPERFAMILY RING/U-box 262 339 - -
Aed3g0596 637 Pfam Armadillo/beta-catenin-like repeat 471 508 IPR000225 GO:0005515
Aed3g0596 637 Pfam Armadillo/beta-catenin-like repeat 387 426 IPR000225 GO:0005515
Aed3g0596 637 Gene3D - 22 132 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0596 Aed-Chr3 4230504 4233563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0596 25 637 U-box Gene Family AT5G42340 61.827 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0596 - - gmx:100777362 1061.6