Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0588 ATGGTGTCCCTCAACCCAAACCCACCTCAAACGTTTCACTTCTTCGACCCCTTCCACATGGAGGATCGGAATAAGAAGGTCCGAAAGCCCTACACCATTACCAAGTCCAGAGAGAACTGGACGGACCAAGAGCATGACAAGTTTCTCGAAGCTCTTACCTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCCAAAACAGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTCGTCCAAAGAGAAAATCTGCTCATCCATACCCACAAAAGGCTTCTAAAAACGCTCTTACTATATCCCAAGTCACGCGGCCATTGCAATCTTCATCTGCTTTATCTGAATCATCATCATACATTTATAGGCCAGATTCATCATCTGTGCTTAGAACTCCAGTTAGCAGTGTACCATTGCCATCTTGGGGTTATAATGTTACATCACCAGTTGGTCTTCCTCGAGTGACTAAAGATGATATGGTGTTGAGTCAACAAGTCAATCCTTTCAATTACTGTTATAGCAGTAGTAATGAGAGCACTCCTAGGAGGGGTTGGCCAAGTAGAAAACAGATTGATCAGGGTGATCAAGGCAAACCAATTATAGTAATGCCGGATTTTGCACAAGTCTATAGCTTCATTGGCAGTGTATTTGATCCAAATGCAACTAATCATCTACAGAGGCTGAAACAGATGGACCCAATAAATGTGAAAACCGTATTGCTATTGATGAGAAACCTCTCCACCAATTTAAGGAATCCTGAATTTGAGAATGAAGCAAGTTTTTTTTTCCTAATAATGCATCTCTTCTCTTCAGAAGGATGCTGTCATTGTACAATGCTAACTTGGAGAAGGCAAAATCCGGTATTCAGCGAAGCCAATCCCTCACTGACAGATCAGAGAGTGCTATCTTATCTTCTTAAGGTGTTCTCAGGAACACAGATTTGA 996 0.4187 MVSLNPNPPQTFHFFDPFHMEDRNKKVRKPYTITKSRENWTDQEHDKFLEALTLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKSAHPYPQKASKNALTISQVTRPLQSSSALSESSSYIYRPDSSSVLRTPVSSVPLPSWGYNVTSPVGLPRVTKDDMVLSQQVNPFNYCYSSSNESTPRRGWPSRKQIDQGDQGKPIIVMPDFAQVYSFIGSVFDPNATNHLQRLKQMDPINVKTVLLLMRNLSTNLRNPEFENEASFFFLIMHLFSSEGCCHCTMLTWRRQNPVFSEANPSLTDQRVLSYLLKVFSGTQI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0588 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Aed3g0588 331 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Aed3g0588 331 CDD SANT 39 82 IPR001005 -
Aed3g0588 331 PANTHER MYB TRANSCRIPTION FACTOR 13 276 - -
Aed3g0588 331 PANTHER SWI/SNF COMPLEX-RELATED 13 276 - -
Aed3g0588 331 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Aed3g0588 331 MobiDBLite consensus disorder prediction 87 117 - -
Aed3g0588 331 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Aed3g0588 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Aed3g0588 331 Gene3D - 39 87 - -
Aed3g0588 331 SMART sant 36 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0588 Aed-Chr3 4164697 4169378 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed3g0588 Myb_DNA-binding 7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0588 - - gmx:100791774 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0588 3 4164697 4169378 Aed3g0588 3 4164697 4169378 ECH
Aed2g0632 2 4578944 4585311 Aed3g0588 3 4164697 4169378 ECH
Aed3g0588 3 4164697 4169378 Aed2g0632 2 4578944 4585311 PCT