Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0571 ATGTCCACATCCATTGATCACTTCTCCCACCTCGGCCTCGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTGCTGCCGTCGCCGCCGCCGCCTCCTAACCACCACCGCCGTCGCCTCCGCCTCCGACGGCATCGTTCTGCCGCGTGTGATCTTCGTGGCGGAGGACGACGACGTGGATGCCGAGGCCATCGGCGCCGTGGGGCTCGACCAGAACGTGATAAACTCCTACCCGAGATTCCAGTTCAACAGAGACGACAACGCGCGGAATATTAGTAACAATAGCACCACCTGCTCTATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTTAGGATGATGCCCGAGTGCCGACATTACTTCCACCTCTGTTGTCTCGATTCGTGGCTCAGACTCAAAGGCTCGTGTCCCATTTGCAGAAACTCGCCGCTCCCGACACCGCTCTCCACGCCGCTGCAAGAGGTGGTGCCGCTTTCTCAGTATGCTGCTGATAGGAGGAGAAATAGGTGA 546 0.5842 MSTSIDHFSHLGLGYSIAIALAFLFLLSTLLLSSYLCCRRRRRLLTTTAVASASDGIVLPRVIFVAEDDDVDAEAIGAVGLDQNVINSYPRFQFNRDDNARNISNNSTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLRLKGSCPICRNSPLPTPLSTPLQEVVPLSQYAADRRRNR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0571 181 Pfam Ring finger domain 109 152 IPR001841 -
Aed3g0571 181 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Aed3g0571 181 SUPERFAMILY RING/U-box 87 157 - -
Aed3g0571 181 CDD RING-H2_PA-TM-RING 109 152 - -
Aed3g0571 181 PANTHER RING-H2 FINGER PROTEIN ATL67 5 179 IPR044289 GO:0016567|GO:0016740
Aed3g0571 181 SMART ring_2 110 151 IPR001841 -
Aed3g0571 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0571 Aed-Chr3 4038798 4039343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0571 1 171 C3H Transcription Factor Family AT5G07040 42.105 4.15e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0571 - - gmx:100778633 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0571 3 4038798 4039343 Aed2g0611 2 4418807 4419925 PCT