Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0570 ATGTCGTCGTCGTCAATATCTCCCACTCCCTCCATCTCCATCACCATCGAGCCCACCACCACGGGCAATGGACTAGACATATTCACCAAGTTGTTCCTATCATTCATCTTTCTCTCTCTCTTCATTCGCGTGTGTTACGTCTACATTACCATGCGCCGTGACCGTGACCGCGACCAACGAGACAATGACGAAGACAACAACATTAACACATTGAATCTTCACGCCGAAGGTTATGGTGACGACCAATATGAAAATCAAAACCACCACACGGGGCTACCCATTAGCGTGATTAAGTCCTACCACAGTTTCCCTTATAATAGCAGCAACACGGCCAATAATAATAACGTGGGAATTACAATTTACAAATACGACACCAAGTCCACGTGCCCCATATGCATCGAGGAGTACGAGGAGTCGGAGATGCTAAGGATGATGCCCCAATGCCGCCACTACTTCCACCGAGATTGCGTTGACAAGTGGCTCAAGTTCAACGCGTCGTGTCCCGTTTGTAGAAACTCGCTCGTGGGAGCTAGTAATCATCATGGTGCCAATTCCTTATTCGAATCCATCTAA 573 0.4764 MSSSSISPTPSISITIEPTTTGNGLDIFTKLFLSFIFLSLFIRVCYVYITMRRDRDRDQRDNDEDNNINTLNLHAEGYGDDQYENQNHHTGLPISVIKSYHSFPYNSSNTANNNNVGITIYKYDTKSTCPICIEEYEESEMLRMMPQCRHYFHRDCVDKWLKFNASCPVCRNSLVGASNHHGANSLFESI 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0570 190 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Aed3g0570 190 PANTHER RING-H2 FINGER PROTEIN ATL67 14 181 IPR044289 GO:0016567|GO:0016740
Aed3g0570 190 CDD RING-H2_PA-TM-RING 128 171 - -
Aed3g0570 190 Pfam Ring finger domain 128 171 IPR001841 -
Aed3g0570 190 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 14 181 - -
Aed3g0570 190 SMART ring_2 129 170 IPR001841 -
Aed3g0570 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 176 IPR013083 -
Aed3g0570 190 SUPERFAMILY RING/U-box 128 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0570 Aed-Chr3 4033106 4033678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0570 16 173 C3H Transcription Factor Family AT5G07040 32.075 1.09e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0570 - - ccaj:109814695 158.688