Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0557 ATGGTTTCCCTTTCCACCACCTCTTTTCTTCCCTTCACTGCAAAAAACTCTTCTACAAGAATCCTCCGACCTACCAATCCATTCTCTTACAACAAGCAACGCAGTAACAAGGATCACAGCAAGGTTTTCTGCGCCTGCATCGCGCCTCCGCAGAACTTCAAGAACCAGGACTCTTCCGCCATCAATTTCAATGGTTCGTCCAAATCAGAACAATTGAGCTCGGCGCGGGATAGTGAGGGCGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGATATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAGTTTTCCAAAGTGCTGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGACCAGATATCAGAGCTAGTCACAGAGAACTTGGCTGCAGTTGGATTGAAGGGAGTTGAGGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGTTCTATTATTTGTGACACCACAAAGGAATCAATAGAGCCAGAGGTGCTCTTGTATGACGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAAGATCTGATTCGCTCTGTACACATAAAAGGGCGAGATGCGCGGGGAAAACCTGGGGATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAACGGAAAGATTGTTTGGGAAGGAATGACCCATGAATTTACAACTTCAATGAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAGATATTAG 879 0.4437 MVSLSTTSFLPFTAKNSSTRILRPTNPFSYNKQRSNKDHSKVFCACIAPPQNFKNQDSSAINFNGSSKSEQLSSARDSEGEDDSDVLIECRDIRHGEAVGIIGPSGTGKSTVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISELVTENLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGDIASYVVVTHQHSTIKRAIDRLLFLHNGKIVWEGMTHEFTTSMNPIVQQFASGSLDGPIRY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0557 292 Pfam ABC transporter 111 202 IPR003439 GO:0005524
Aed3g0557 292 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 112 292 - -
Aed3g0557 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 283 IPR003439 GO:0005524
Aed3g0557 292 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524
Aed3g0557 292 Gene3D - 111 283 IPR027417 -
Aed3g0557 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 275 IPR027417 -
Aed3g0557 292 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 30 112 - -
Aed3g0557 292 MobiDBLite consensus disorder prediction 57 73 - -
Aed3g0557 292 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 112 292 - -
Aed3g0557 292 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 30 112 - -
Aed3g0557 292 MobiDBLite consensus disorder prediction 57 84 - -
Aed3g0557 292 SMART AAA_5 95 260 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0557 Aed-Chr3 3935169 3940061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0557 94 265 Calmodulin-binding Proteins AT2G36910 24.537 3.42e-06 46.6