LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g0542	ATGTCTCCCACCACTGGCTCTTTCTTCATGCTGCCACCTCTGAGTAACGAAGGATCAATGCTAACAACTGAACAAGGGAATGCGGATGTGTCAACCGCATCTGATGCCGCTGCTGCCTCTTTCAAATTCAAGCCTCGAGGAGGACATTTGGATCCTAATCATTTGCCTCCTCACTCTGCTACTCTGAATCGGGTTTCTAGTCATTTCCACTCGGTAAAGGGAAGAAATAGAGAGAGCCAACAACTACTTGCTCAAGTTCAACCACCATTAGACTTTTCATTCCCAGCAGACTTTTCAAAATTGAAAAACAGTGAAGTGAATTCGTACAACGATATGAAAATGGTAAACGATGCGCTTGTTAATGCCAACAGCAATGTTGAGATGATGCTGCCGATGTCCAGCTCTGAGGAAGTAAGTGATGAAAGCGCTCTGCCGAAGAATGCTATGAATGGCACTGAGGATTATGGAGGGCAGGCTGCTGCTTCAGAAGGAGAACAGAAAGAGGCATCTCATGCAACAGGAGCAGTAAGGACCTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGGAGTGAGTATCCCAGAAGCTATTACAAATGCACACAGCCTAATTGTCTGGTCAAGAAGAAGGTGGAACGATCTCATGATGGCCAAATAACGGAGATTATTTACAAGGGTGCTCATAACCATGTAAAGCCACACCCCGGTCATCATCGAGCATCTGCACTTTCTACTGATGACATTTCAGACATGGGTGAAGACAATAGTACATTGGCTAAGGTTGATGGTGGATATGTCTGGAGAAGTATTCAGTCAGGATTGAAAGATACAAAACAACAAAGTTTTGATTGGGGTCAGGAAAGGACATCATCAACTTCTCCTGTCACTGATCTTTCTGATCCAATATCGATTAACAAAGCTAAATCTGTATGTATGTTTGAATCAGAGGACACTCCGGAGCTTTCTTCTACACTTGCCAGTCATGATGGTGAGGAAGATGTAGCCACTCAAGCACTTGTGTTGGCTGAAGACGAAGCTGAGAATGATGAATCAGACTCTAAAAGAAGGAAGAAAGAGAGCTTTGCAGCTGAGCCAAATTTGCCAAGTAGGGCTGTTCGTGAGCCAAGAGTGGTTGTCCAAATTGAGAGTGATGTGGACATACTTGATGATGGTTACCGCTGGCGTAAGTATGGACAAAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGCACAAGTGCTGGATGTATGGTAAGGAAACATGTGGAAAGGGCTTCACATAATCTGAAATATGTCCTTACTACTTATGAGGGAAAGCATAATCATGAAGTGCCAACTGCTAGAACCAACAATCAGGTAAACTCAGGTGATGGTGGTTTACCTTCCAATGGTGCTAATGGGCAAGTGGCTCTTACATTACCGGGGAGTGCTGGCATTCCAAAGCCTGAAACTCATCAAACTCTTGGACATCATTTTGATAGAAAAACTGAGTTCAGCAATGAGTTTCTCAGGCCTGGTTTGGTTGGAAGTTTCAGTAATGATATGAAGTTTGGACCTTCTTCCCTTTGCCAAATGAAGTATCCTTCCTTGAACAACACCATGCCTTATGGCTCCTATGAACTGAACTCTGAACGTTGTGCTGCCCCTCAAGCTGGATCCATTGCTTCAATGTTCCCTGATTTTCCAATGCCGCTACCGTTGAATCTTCCCTCATCAGGAAACTTTTCACTTGCTGGACTCAATTTCAACTGTGTAAAACAGATGAATCCTGTCCAGTCTTTCCTTTCGGGGCAGCAGGTGAAGGACATCGATACTGCGTTCCTCAGGCCTAAACAGGAACAGAAGGATGGCAATATATATGGCTCCTGCATGCCTTCACTAGATCATGCAAATGCTTCACTCACTTCTTCACCATCACAAACCATTTATCAACGTGTCATGCAAAATTTCCCTTCATAG	1983	0.4372	MSPTTGSFFMLPPLSNEGSMLTTEQGNADVSTASDAAAASFKFKPRGGHLDPNHLPPHSATLNRVSSHFHSVKGRNRESQQLLAQVQPPLDFSFPADFSKLKNSEVNSYNDMKMVNDALVNANSNVEMMLPMSSSEEVSDESALPKNAMNGTEDYGGQAAASEGEQKEASHATGAVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCLVKKKVERSHDGQITEIIYKGAHNHVKPHPGHHRASALSTDDISDMGEDNSTLAKVDGGYVWRSIQSGLKDTKQQSFDWGQERTSSTSPVTDLSDPISINKAKSVCMFESEDTPELSSTLASHDGEEDVATQALVLAEDEAENDESDSKRRKKESFAAEPNLPSRAVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCMVRKHVERASHNLKYVLTTYEGKHNHEVPTARTNNQVNSGDGGLPSNGANGQVALTLPGSAGIPKPETHQTLGHHFDRKTEFSNEFLRPGLVGSFSNDMKFGPSSLCQMKYPSLNNTMPYGSYELNSERCAAPQAGSIASMFPDFPMPLPLNLPSSGNFSLAGLNFNCVKQMNPVQSFLSGQQVKDIDTAFLRPKQEQKDGNIYGSCMPSLDHANASLTSSPSQTIYQRVMQNFPS	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g0542	660	ProSiteProfiles	WRKY domain profile.	388	453	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	Pfam	WRKY DNA -binding domain	394	451	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	Pfam	WRKY DNA -binding domain	180	235	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	SMART	WRKY_cls	179	237	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	SMART	WRKY_cls	393	452	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	MobiDBLite	consensus disorder prediction	234	253	-	-
	Aed3g0542	660	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	2	635	IPR044810	GO:0003700
	Aed3g0542	660	PANTHER	WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1	2	635	-	-
	Aed3g0542	660	Gene3D	WRKY domain	380	446	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	MobiDBLite	consensus disorder prediction	1	24	-	-
	Aed3g0542	660	Gene3D	WRKY domain	165	239	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	MobiDBLite	consensus disorder prediction	282	305	-	-
	Aed3g0542	660	MobiDBLite	consensus disorder prediction	133	178	-	-
	Aed3g0542	660	MobiDBLite	consensus disorder prediction	353	368	-	-
	Aed3g0542	660	SUPERFAMILY	WRKY DNA-binding domain	176	238	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	SUPERFAMILY	WRKY DNA-binding domain	386	453	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	ProSiteProfiles	WRKY domain profile.	174	238	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g0542	660	MobiDBLite	consensus disorder prediction	349	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g0542	Aed-Chr3	3855081	3858184	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g0542	2	456	WRKY Transcription Factor Family	AT5G56270	42.887	3.07e-89	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Aed3g0542		WRKY	6.7e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g0542	K18835		-	gmx:100800211	1082.01